recA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417179&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417179&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:56, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G79050 (score: 1.000; bootstrap: 65%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00027081 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004297 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000001990 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000013557 (score: 0.471)
  • ENSCAFP00000025883 (score: 0.062)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016274 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000019726 (score: 0.250)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231571 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000216024 (score: 1.000; bootstrap: 100%)
  • ENSP00000267868 (score: 0.453)
  • ENSP00000340560 (score: 0.064)
  • ENSP00000336701 (score: 0.059)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000012067 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000000325 (score: 0.444)
  • ENSMODP00000018294 (score: 0.057)

From Inparanoid:20070104

Mus musculus

  • MGI:105393 (score: 1.000; bootstrap: 100%)
  • MGI:97890 (score: 0.450)
  • MGI:1099436 (score: 0.061)
  • MGI:2150020 (score: 0.056)

From Inparanoid:20070104

Oryza gramene

  • Q5N6Y9 (score: 1.000; bootstrap: 97%)
  • Q7F1X7 (score: 0.653)
  • Q53QJ3 (score: 0.309)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000024757 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000011825 (score: 0.453)
  • ENSPTRP00000016062 (score: 0.059)
  • ENSPTRP00000010973 (score: 0.057)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018526 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000041615 (score: 0.230)
  • ENSRNOP00000008846 (score: 0.057)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YER095W (score: 1.000; bootstrap: 100%)
  • YER179W (score: 0.327)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC6444c (score: 1.000; bootstrap: 100%)
  • SPAC8E113c (score: 0.358)

From Inparanoid:20070104

Shigella flexneri

RECA

From SHIGELLACYC

E. coli O157

RECA

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00154

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Notes

Links

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Name URL Comments
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References

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Categories

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