metK:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417417&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417417&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:54, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000023437 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000033210 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G36880 (score: 1.000; bootstrap: 100%)
  • AT3G17390 (score: 1.000; bootstrap: 100%)
  • AT1G02500 (score: 0.848)
  • AT4G01850 (score: 0.845)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000031255 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000027808 (score: 0.617)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038995 (score: 1.000; bootstrap: 100%)
  • WBGene00038996 (score: 0.861)
  • WBGene00035751 (score: 0.520)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00015540 (score: 1.000; bootstrap: 100%)
  • WBGene00015538 (score: 0.865)
  • WBGene00006416 (score: 0.843)
  • WBGene00013652 (score: 0.610)
  • WBGene00008205 (score: 0.585)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000011509 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000023298 (score: 0.725)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016721 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-6127 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-505 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050327-6 (score: 0.547)
  • ZDB-GENE-050327-6 (score: 0.547)
  • ZDB-CDNA-040425-506 (score: 0.169)
  • ZDB-GENE-030131-2049 (score: 0.169)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230070 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0005278 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15421-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000003899 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000024750 (score: 0.426)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000303147 (score: 1.000; bootstrap: 100%)
  • ENSP00000280867 (score: 0.732)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000024512 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000005930 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019473 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000001856 (score: 0.683)

From Inparanoid:20070104

Mus musculus

  • MGI:88017 (score: 1.000; bootstrap: 100%)
  • MGI:2443731 (score: 0.708)

From Inparanoid:20070104

Oryza gramene

  • Q4LB21 (score: 1.000; bootstrap: 100%)
  • Q9LGU6 (score: 0.906)
  • Q6AVZ2 (score: 0.897)
  • P46611 (score: 0.897)
  • Q8VXC5 (score: 0.894)
  • Q7F660 (score: 0.835)
  • P93438 (score: 0.835)
  • Q4LB24 (score: 0.818)
  • Q4LB23 (score: 0.815)
  • P50299 (score: 0.813)
  • Q4LB22 (score: 0.793)
  • Q8W531 (score: 0.207)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000004677 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000020814 (score: 0.055)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018170 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000015190 (score: 0.384)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR502C (score: 1.000; bootstrap: 100%)
  • YLR180W (score: 0.842)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC14F55c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000150744 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000165612 (score: 0.661)
  • NEWSINFRUP00000165342 (score: 0.400)
  • NEWSINFRUP00000160504 (score: 0.365)
  • NEWSINFRUP00000136500 (score: 0.229)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00016485001 (score: 1.000; bootstrap: 100%)
  • GSTENP00017321001 (score: 0.656)
  • GSTENP00029452001 (score: 0.603)
  • GSTENP00022288001 (score: 0.372)
  • GSTENP00025261001 (score: 0.242)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000007635 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000002716 (score: 0.510)

From Inparanoid:20070104

Shigella flexneri

METK

From SHIGELLACYC

E. coli O157

METK

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00438

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Notes

Links

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Name URL Comments
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References

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