kefA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_414998&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_414998&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:53, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000009033 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000001378 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00039942 (score: 1.000; bootstrap: 100%)
  • WBGene00039941 (score: 0.443)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00018317 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000024846 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000009329 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012164 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000010710 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000344655 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000001218 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000012986 (score: 0.251)
  • ENSMMUP00000014333 (score: 0.054)
  • ENSMMUP00000016639 (score: 0.053)
  • ENSMMUP00000006853 (score: 0.050)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000013565 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000021428 (score: 0.094)
  • ENSMODP00000023725 (score: 0.056)
  • ENSMODP00000012498 (score: 0.055)

From Inparanoid:20070104

Mus musculus

  • MGI:1924298 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q5KQK3 (score: 1.000; bootstrap: 100%)
  • Q5VR43 (score: 0.473)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000005162 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000013322 (score: 0.055)
  • ENSPTRP00000014947 (score: 0.054)
  • ENSPTRP00000014897 (score: 0.052)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000023153 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000029680 (score: 0.082)
  • ENSRNOP00000028432 (score: 0.065)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000157441 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000160962 (score: 0.431)
  • NEWSINFRUP00000142957 (score: 0.194)
  • NEWSINFRUP00000162893 (score: 0.174)
  • NEWSINFRUP00000143156 (score: 0.064)
  • NEWSINFRUP00000156946 (score: 0.060)
  • NEWSINFRUP00000181188 (score: 0.052)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000029450 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

AEFA

From SHIGELLACYC

E. coli O157

AEFA

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00924

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Notes

Links

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Name URL Comments
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References

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Categories

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