dnaE:Gene Product(s): Difference between revisions

Standard name	DnaE product
Synonyms	DNA polymerase III alpha subunit product^[1], B0184 product^[2]^[1], SdgC product^[2]^[1], PolC product^[2]^[1], DnaE product^[2]^[1]
Product description	DNA polymerase III, α subunit^[2]^[3]; Component of ; DNA polymerase III, core enzyme^[3]; DNA polymerase III, holoenzyme^[3]
EC number (for enzymes)	2.7.7.7^[1]
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Aspect	Notes	Status
	GO:0005737	cytoplasm	C	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0006261	DNA-dependent DNA replication	P	Seeded from EcoCyc 11.1^[3].	required fields missing
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Interactions

Partner Type	Partner	Notes
Protein	Subunits of DNA polymerase III, core enzyme	could be indirect
Protein	Subunits of DNA polymerase III, holoenzyme	could be indirect
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MSEPRFVHLR VHSDYSMIDG LAKTAPLVKK AAALGMPALA ITDFTNLCGL VKFYGAGHGA GIKPIVGADF NVQCDLLGDE LTHLTVLAAN NTGYQNLTLL ISKAYQRGYG AAGPIIDRDW LIELNEGLIL LSGGRMGDVG RSLLRGNSAL VDECVAFYEE HFPDRYFLEL IRTGRPDEES YLHAAVELAE ARGLPVVATN DVRFIDSSDF DAHEIRVAIH DGFTLDDPKR PRNYSPQQYM RSEEEMCELF ADIPEALANT VEIAKRCNVT VRLGEYFLPQ FPTGDMSTED YLVKRAKEGL EERLAFLFPD EEERLKRRPE YDERLETELQ VINQMGFPGY FLIVMEFIQW SKDNGVPVGP GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMEK RDQVIEHVAD MYGRDAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KLIPPDPGMT LAKAFEAEPQ LPEIYEADEE VKALIDMARK LEGVTRNAGK HAGGVVIAPT KITDFAPLYC DEEGKHPVTQ FDKSDVEYAG LVKFDFLGLR TLTIINWALE MINKRRAKNG EPPLDIAAIP LDDKKSFDML QRSETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIDRKHGREE ISYPDVQWQH ESLKPVLEPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM AKQRSVFAEG AEKNGINAEL AMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKAHYPA EFMAAVMTAD MDNTEKVVGL VDECWRMGLK ILPPDINSGL YHFHVNDDGE IVYGIGAIKG VGEGPIEAII EARNKGGYFR ELFDLCARTD TKKLNRRVLE KLIMSGAFDR LGPHRAALMN SLGDALKAAD QHAKAEAIGQ ADMFGVLAEE PEQIEQSYAS CQPWPEQVVL DGERETLGLY LTGHPINQYL KEIERYVGGV RLKDMHPTER GKVITAAGLV VAARVMVTKR GNRIGICTLD DRSGRLEVML FTDALDKYQQ LLEKDRILIV SGQVSFDDFS GGLKMTAREV MDIDEAREKY ARGLAISLTD RQIDDQLLNR LRQSLEPHRS GTIPVHLYYQ RADARARLRF GATWRVSPSD RLLNDLRGLI GSEQVELEFD
Mol. Wt	129.9 kDa (calc) ^[2]
pI
Extinction coefficient	102110 - 103610 (calc based on 39 Y, 8 W, and 12 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession	Residues covered	Notes
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG10238-MONOMER
UniProt (EcoliWiki Page)	UniProt:P10443
PFAM (EcoliWiki Page)	PFAM:PF02231
RefSeq (EcoliWiki Page)	RefSeq:NP_414726
ModBase (EcoliWiki Page)	ModBase:P10443
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] 3.0 ^3.1 ^3.2 ^3.3 ^3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[1]

[2]

[3]

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@@ Line 16: / Line 25: @@
 |{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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 ==Nomenclature==
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 !{{table heading style}} |Synonyms
 |
-DNA polymerase III alpha subunit<ref name='LIB:Riley_2006'/>, B0184<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SdgC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PolC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+DNA polymerase III alpha subunit product<ref name='LIB:Riley_2006'/>, B0184 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SdgC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PolC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaE product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
 |-
 !{{table heading style}} |Product description
 |
-DNA polymerase III, &alpha; subunit<ref name='LIB:EcoCyc10.6'/>; DNA polymerase III, &alpha; subunit<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:DNA polymerase III, core enzyme|DNA polymerase III, core enzyme]]<ref name='LIB:EcoCyc11.1'/>; DNA polymerase III, core enzyme<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:DNA polymerase III, holoenzyme|DNA polymerase III, holoenzyme]]<ref name='LIB:EcoCyc11.1'/>; DNA polymerase III, holoenzyme<ref name='LIB:EcoCyc11.1'/>
+DNA polymerase III, &alpha; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
+Component of ; [[:Category:Complex:DNA polymerase III, core enzyme|DNA polymerase III, core enzyme]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:DNA polymerase III, holoenzyme|DNA polymerase III, holoenzyme]]<ref name='LIB:EcoCyc11.1'/>
 |-
 !{{table heading style}} |EC number (for enzymes)
 |
-*[http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7]<ref name='LIB:Riley_2006'/>
+** [http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7]<ref name='LIB:Riley_2006'/>
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@@ Line 48: / Line 59: @@
 ==Function==
+{{BacktoTop}}
 <protect>
-===Gene Ontology===
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 required fields missing
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 could be indirect
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 {{Product_interactions_help}}
 <!--Function_notes--></protect>
 ===Notes===
 ==Localization==
+<!--box uid=421aa90e079fa326b6494f812ad13e79.19938.R46a7b3496c8dd-->
+<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
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 ===Notes===
 ==Structure and Physical Properties==
+{{BacktoTop}}
 <protect>
-===Physical Properties===
+<span id="Sequence"></span><big>'''Physical Properties'''</big>
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 - 103610 (calc based on 39 Y, 8 W, and 12 C residues)
 |-
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-===Domains/Motifs/Modification Sites===
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 {{Product_domains_motifs_help}}
-===Structure===
+<span id="Structure"></span><big>'''Structure'''</big>
+<!--box uid=421aa90e079fa326b6494f812ad13e79.19938.S46a7b34b0ea48-->
+<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
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+|- {{table heading style}}
+!Structure Type!!Organism!!Accession!!Residues covered!!Notes
+|-class='sortbottom'
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@@ Line 197: / Line 232: @@
 ==Gene Product Resources==
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+{{BacktoTop}}
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 <!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
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 ===Notes===
 ==Accessions in Other Databases==
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@@ Line 261: / Line 299: @@
 ==Links==
+{{BacktoTop}}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.19938.X46a7b34e8b36d-->
+<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
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+<noinclude>
-<noinclude>
 ==References==
+{{BacktoTop}}
 {{RefHelp}}
 <references/>
 __NOTOC__
-[[Category:GO:0005737]][[Category:GO:0006261]][[Category:Complex:DNA polymerase III, core enzyme]][[Category:Complex:DNA polymerase III, holoenzyme]]</noinclude>
+</noinclude>

dnaE:Gene Product(s): Difference between revisions

Revision as of 06:36, 28 July 2007

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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