Phage lambda nu3:Gene Product(s): Difference between revisions

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Table edited by Bmcintosh via TableEdit
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!|Partner Type!!Partner!!Notes!!References!!Evidence
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!align=left {{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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<pre>MDATRQMFAQ KVSAYTGLSV QVVLDTEAAV YSGQEAIDAG LADELVNSTD AITVMRDALD
<pre>MDATRQMFAQ KVSAYTGLSV QVVLDTEAAV YSGQEAIDAG LADELVNSTD AITVMRDALD
ARKSRLSGGR MTKETQSTTV SATASQADVT DVVPATEGEN ASAAQPDVNA QITAAVAAEN
ARKSRLSGGR MTKETQSTTV SATASQADVT DVVPATEGEN ASAAQPDVNA QITAAVAAEN
SRIMGILNCE EAHGREEQAR VLAETPGMTV KTARRILAAA PQSAQARSDT ALDRLMQGAP
SRIMGILNCE EAHGREEQAR VLAETPGMTV KTARRILAAA PQSAQARSDT ALDRLMQGAP
APLAAGNPAS DAVNDLLNTP V</pre>  
APLAAGNPAS DAVNDLLNTP V</pre>
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!align=left {{table heading style}} |Length
!align=left {{table heading style}} |Length
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!align=left {{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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2,980 - 3,105 (calc based on 2 Y, W, and 1 C residues)
2,980 - 3,105 (calc based on 2 Y, 0 W, and 1 C residues)


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!|Type!!Residues!!Description!!Notes!!References
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!|Resource type!!Source!!Notes/Reference
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Latest revision as of 20:15, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

nu3

Synonyms

nu3, lambdap06

Product description

capsid assembly protein (core protein [1])

EC number (for enzymes)


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Notes

Function

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Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0046797

viral procapsid maturation

PMID:21821043[2]

IDA: Inferred from Direct Assay

P

Fig 6 & Table 1.

complete

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Interactions

<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MDATRQMFAQ KVSAYTGLSV QVVLDTEAAV YSGQEAIDAG LADELVNSTD AITVMRDALD
ARKSRLSGGR MTKETQSTTV SATASQADVT DVVPATEGEN ASAAQPDVNA QITAAVAAEN
SRIMGILNCE EAHGREEQAR VLAETPGMTV KTARRILAAA PQSAQARSDT ALDRLMQGAP
APLAAGNPAS DAVNDLLNTP V
Length

201

Mol. Wt

20.811 kDa

pI

4.4 (calculated)

Extinction coefficient

2,980 - 3,105 (calc based on 2 Y, 0 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_lambda_nu3 taxon=10710 </beststructure>

Models

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Structure figures

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Edited by Roger W. Hendrix, Jeffrey W. Roberts, Franklin W. Stahl and Robert A. Weisberg (1983) Lambda II (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY)
  2. ↑ Medina, EM et al. (2011) The bacteriophage lambda gpNu3 scaffolding protein is an intrinsically disordered and biologically functional procapsid assembly catalyst. J. Mol. Biol. 412 723-36 PubMed

Categories

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