Phage lambda B:Gene Product(s): Difference between revisions

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<pre>MKTPTIPTLL GPDGMTSLRE YAGYHGGGSG FGGQLRSWNP PSESVDAALL PNFTRGNARA
<pre>MKTPTIPTLL GPDGMTSLRE YAGYHGGGSG FGGQLRSWNP PSESVDAALL PNFTRGNARA
DDLVRNNGYA ANAIQLHQDH IVGSFFRLSH RPSWRYLGIG EEEARAFSRE VEAAWKEFAE
DDLVRNNGYA ANAIQLHQDH IVGSFFRLSH RPSWRYLGIG EEEARAFSRE VEAAWKEFAE
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YIAAGLGVSY EQLSRNYAQM SYSTARASAN ESWAYFMGRR KFVASRQASQ MFLCWLEEAI
YIAAGLGVSY EQLSRNYAQM SYSTARASAN ESWAYFMGRR KFVASRQASQ MFLCWLEEAI
VRRVVTLPSK ARFSFQEARS AWGNCDWIGS GRMAIDGLKE VQEAVMLIEA GLSTYEKECA
VRRVVTLPSK ARFSFQEARS AWGNCDWIGS GRMAIDGLKE VQEAVMLIEA GLSTYEKECA
KRGDDYQEIF AQQVRETMER RAAGLKPPAW AAAAFESGLR QSTEEEKSDS RAA</pre>  
KRGDDYQEIF AQQVRETMER RAAGLKPPAW AAAAFESGLR QSTEEEKSDS RAA</pre>
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Latest revision as of 20:15, 17 February 2015

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

B

Synonyms

B, lambdap04, Portal Protein B

Product description

capsid component

EC number (for enzymes)


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Notes

Function

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Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0019030

icosahedral viral capsid

PMID:4509659[1]

IDA: Inferred from Direct Assay

C

complete

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Interactions

<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

head-tail connector

minor capsid component (as well as the cleavage product B*)

Hendrix and Casjens, 1975; Hohn et al., 1975; 1976; Kaiser et al., 1974; Murialdo and Becker, 1978; Tsui and Hendrix, 1979; H.Murialdo, pers. commun.

PMID:160360[2]


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MKTPTIPTLL GPDGMTSLRE YAGYHGGGSG FGGQLRSWNP PSESVDAALL PNFTRGNARA
DDLVRNNGYA ANAIQLHQDH IVGSFFRLSH RPSWRYLGIG EEEARAFSRE VEAAWKEFAE
DDCCCIDVER KRTFTMMIRE GVAMHAFNGE LFVQATWDTS SSRLFRTQFR MVSPKRISNP
NNTGDSRNCR AGVQINDSGA ALGYYVSEDG YPGWMPQKWT WIPRELPGGR ASFIHVFEPV
EDGQTRGANV FYSVMEQMKM LDTLQNTQLQ SAIVKAMYAA TIESELDTQS AMDFILGANS
QEQRERLTGW IGEIAAYYAA APVRLGGAKV PHLMPGDSLN LQTAQDTDNG YSVFEQSLLR
YIAAGLGVSY EQLSRNYAQM SYSTARASAN ESWAYFMGRR KFVASRQASQ MFLCWLEEAI
VRRVVTLPSK ARFSFQEARS AWGNCDWIGS GRMAIDGLKE VQEAVMLIEA GLSTYEKECA
KRGDDYQEIF AQQVRETMER RAAGLKPPAW AAAAFESGLR QSTEEEKSDS RAA
Length

533

Mol. Wt

59.465 kDa

pI

5.9 (calculated)

Extinction coefficient

99,810 - 100,685 (calc based on 19 Y, 13 W, and 7 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

<motif_map/>

Structure
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Structures

<beststructure> gene=Phage_lambda_B taxon=10710 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Kaiser, D & Masuda, T (1973) In vitro assembly of bacteriophage Lambda heads. Proc. Natl. Acad. Sci. U.S.A. 70 260-4 PubMed
  2. ↑ Szybalski, EH & Szybalski, W (1979) A comprehensive molecular map of bacteriophage lambda. Gene 7 217-70 PubMed

Categories

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