dnaA:Quickview: Difference between revisions
/Volumes/r3/t3/ul/phpwikibots/trunk/touch_all_tables.php |
touch |
||
| Line 23: | Line 23: | ||
* ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | ||
* | * | ||
****************************************************************************************** --> | ****************************************************************************************** --> | ||
{| id="I49aee3f18e899" class=" tableEdit New_Quickview_Table" | {| id="I49aee3f18e899" class=" tableEdit New_Quickview_Table" | ||
| Line 33: | Line 33: | ||
!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK3694, b3702, JW3679''<ref name='LIB:Riley_2006'/> | ''ECK3694, b3702, JW3679''<ref name='LIB:Riley_2006'/>, JW3679'' | ||
|- | |- | ||
!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
| Line 43: | Line 43: | ||
!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B3702<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DNA biosynthesis; DnaA-ATP initiates chromosome replication; can be transcription regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B3702<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DNA biosynthesis; DnaA-ATP initiates chromosome replication; can be transcription regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3694, JW3679, b3702'' | ||
|- | |- | ||
!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
| Line 63: | Line 63: | ||
!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
|| | || | ||
[http://porteco.org/AjaxSearch.jsp?searchString=dnaA&s=search | [[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=dnaA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10235]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000229&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=dnaA&loc=MG1655%3A3881752..3880349,W3110%3A3756686..3758089,REL606%3A3844090..3842687,BW2952%3A3768682..3770085]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3768682&end=3770085&gene=dnaA&aa=mslslwqqclarlqdelpatefsmwirplqaelsdntlalyapnrfvldwvrdkylnninglltsfcgadapqlrfevgtkpvtqtpqaavtsnvaapaqvaqtqpqraapstrsgwdnvpapaeptyrsnvnvkhtfdnfvegksnqlaraaarqvadnpggaynplflyggtglgkthllhavgngimarkpnakvvymhserfvqdmvkalqnnaieefkryyrsvdalliddiqffankersqeeffhtfnallegnqqiiltsdrypkeingvedrlksrfgwgltvaieppeletrvailmkkadendirlpgevaffiakrlrsnvrelegalnrviananftgraitidfvrealrdllalqeklvtidniqktvaeyykikvadllskrrsrsvarprqmamalakeltnhslpeigdafggrdhttvlhacrkieqlreeshdikedfsnlirtlss]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dnaA+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dnaA]] | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Latest revision as of 21:55, 27 May 2013
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
dnaA |
|---|---|
| Gene Synonym(s) |
ECK3694, b3702, JW3679[1], JW3679 |
| Product Desc. |
DnaA transcriptional dual regulator[2][3] DNA synthesis initiator and global transcription regulator; binds DNA at DnaA boxes, binds cardiolipin and other acidic phospholipids, binds ATP[4] |
| Product Synonyms(s) |
chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator[1], B3702[2][1], DnaA[2][1], DNA biosynthesis; DnaA-ATP initiates chromosome replication; can be transcription regulator[2][1] , ECK3694, JW3679, b3702 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): dnaAN-recF[2] |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
DnaA-ATP is the active form; DnaA-ADP is inactive; switching betwee the two forms modulates initiation activity. Acidic phospholipids release bound ADP, reactivating DnaA by allowing ATP to rebind. Null mutations in seqA, yccV or rpoN suppress dna46(Ts). Increases in DnaA levels reduce Fis oriC primary binding thus allowing DnaA to bind, this may play a role in the dynamics of prereplication complexes. Collapsed replication forks (primarily within 10 map units of oriC) are a result of the level of initiation induced by elevated dnaA expression. Hda-ADP is the monomeric active form for promoting clamp-mediated DNA-ATP hydrolysis (Su'etsugu, 2008).[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.