zapB:Gene: Difference between revisions

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!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ECK3920, b3928, JW3899'', yiiU<ref name='LIB:Riley_2006'/>
''ECK3920, b3928, JW3899'', yiiU<ref name='LIB:Riley_2006'/>, JW3899, yiiU''


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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11878 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11878 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|4115538|4117783|GBrowse(MG1655)}}
{{GBrowseLink|ecoli|NC_000913|4115538|4117783|GBrowse(MG1655)}}
   
   
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*[http://biocyc.org/ECOLI/sequence?object=EG11878 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG11878 EcoCyc Sequence Dump]  
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{{GBrowseLink|BW2952|NC_012759|4006207|4006452|GBrowse (BW2952)}}
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{{GBrowseLink|W3110|AC_000091|3516921|3519166|GBrowse(W3110)}}  
{{GBrowseLink|ecoli_W3110|AC_000091|3516921|3519166|GBrowse(W3110)}}  
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{{GBrowseLink|DH10B|NC_010473|4215745|4216970|GBrowse(DH10B)}}
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Primer 2:CCGACCTCTTCCATGCGACCCAG  
Primer 2:CCGACCTCTTCCATGCGACCCAG  
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[[:Category:Kohara_Phage:12E3|12E3]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=538 Genobase]
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PMID:3038334
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[[:Category:Kohara_Phage:4H12|4H12]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=539 Genobase]
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PMID:3038334
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11878 ECOCYC:EG11878]
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Escherichia coli str. K-12 substr. MG1655
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[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/gene?term=948420 GeneID:948420]
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Escherichia coli str. K-12 substr. MG1655


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Revision as of 22:21, 24 September 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

zapB

Mnemonic

Z-ring-associated protein

Synonyms

ECK3920, b3928, JW3899, yiiU[1], JW3899, yiiU

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

88.72 minutes 

MG1655: 4116538..4116783
<gbrowseImage> name=NC_000913:4116538..4116783 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4097998..4098243
<gbrowseImage> name=NC_012967:4097998..4098243 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4006207..4006452
<gbrowseImage> name=NC_012759:4006207..4006452 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3518166..3517921
<gbrowseImage> name=AC_000091:3517921..3518166 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4216235..4216480
<gbrowseImage> name=NC_010473:4216235..4216480 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔyiiU (Keio:JW3899)

deletion

deletion

PMID:16738554[2]

Shigen
CGSC10814[3]

ΔyiiU787::kan

PMID:16738554[2]

CGSC:105434


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3899

Plasmid clone

Shigen

PMID:16769691[4]

Status:Clone OK

Primer 1:GCCACAATGTCATTAGAAGTGTT

Primer 2:CCGACCTCTTCCATGCGACCCAG

12E3

Kohara Phage

Genobase

PMID:3038334[5]

4H12

Kohara Phage

Genobase

PMID:3038334[5]

zih-35::Tn10

Linked marker

CAG18495 = CGSC7467[3]

est. P1 cotransduction: 8% [6]

pflD501::Tn10

Linked marker

CAG18477 = CGSC7470[3]

est. P1 cotransduction: 36% [6]
Synonyms:zij-501::Tn10 nnnCAG18477 also carries metF79(Am) (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11878

EchoBASE (EcoliWiki Page)

EchoBASE:EB1824

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3928

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4880

EcoGene (EcoliWiki Page)

EcoGene:EG11878

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YIIU

ASAP (EcoliWikiPage)

ASAP:ABE-0012835

EcoCyc (EcoliWiki Page)

ECOCYC:EG11878

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948420

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ 5.0 5.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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