ydfC:Gene: Difference between revisions

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!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ydfC, ECK1567, b1573, JW1565'', rzpQ<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ydfC, ECK1567, b1573, JW1565'', rzpQ<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, ECK1547, JW1545, Rz, ydfP, b1553''


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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11302 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11302 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|1645847|1648065|GBrowse(MG1655)}}
{{GBrowseLink|ecoli|NC_000913|1645847|1648065|GBrowse(MG1655)}}
   
   
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*[http://biocyc.org/ECOLI/sequence?object=EG11302 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG11302 EcoCyc Sequence Dump]  
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{{GBrowseLink|BW2952|NC_012759|1529113|1529610|GBrowse (BW2952)}}
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{{GBrowseLink|W3110|AC_000091|1649537|1651755|GBrowse(W3110)}}  
{{GBrowseLink|ecoli_W3110|AC_000091|1649537|1651755|GBrowse(W3110)}}  
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6826 ECOCYC:G6826]
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Escherichia coli str. K-12 substr. MG1655
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
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[http://ecogene.org/geneinfo.php?eg_id=EG13828 EcoGene:EG13828]
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Escherichia coli str. K-12 substr. MG1655
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[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/gene?term=946101 GeneID:946101]
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Escherichia coli str. K-12 substr. MG1655


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Revision as of 07:05, 24 September 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ydfC

Mnemonic

Rz protein

Synonyms

ydfC, ECK1567, b1573, JW1565, rzpQ[1][2], ECK1547, JW1545, Rz, ydfP, b1553

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

35.49 minutes 

MG1655: 1646847..1647065
<gbrowseImage> name=NC_000913:1646847..1647065 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1611224..1611721
<gbrowseImage> name=NC_012967:1611224..1611721 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1529113..1529610
<gbrowseImage> name=NC_012759:1529113..1529610 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1650537..1650755
<gbrowseImage> name=AC_000091:1650537..1650755 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ydfC::Tn5KAN-I-SceI (FB20370)

Insertion at nt 166 in Plus orientation

PMID:15262929[3]

E. coli Genome Project:FB20371

contains pKD46

ydfC::Tn5KAN-I-SceI (FB20370)

Insertion at nt 166 in Plus orientation

PMID:15262929[3]

E. coli Genome Project:FB20372

does not contain pKD46

ΔrzpQ722::kan

PMID:16738554[4]

CGSC:106338


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[5]

Status:

Primer 1:

Primer 2:

12E2

Kohara Phage

Genobase

PMID:3038334[6]

7B6

Kohara Phage

Genobase

PMID:3038334[6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11302

EchoBASE (EcoliWiki Page)

EchoBASE:EB1279

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1573

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C1407

EcoGene (EcoliWiki Page)

EcoGene:EG11302

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:Z6076

ASAP (EcoliWikiPage)

ASAP:ABE-0005255

EcoCyc (EcoliWiki Page)

ECOCYC:G6826

Escherichia coli str. K-12 substr. MG1655

EcoGene (EcoliWiki Page)

EcoGene:EG13828

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946101

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
  4. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  6. ↑ 6.0 6.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed

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