baeR:Gene: Difference between revisions
Data loaded by TableEdit_Loader. |
imported>Wikientrybot Bulk deleting accessions. |
||
| Line 280: | Line 280: | ||
| | | | ||
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=357 Genobase] | [http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=357 Genobase] | ||
| | |||
PMID:3038334 | |||
|- | |||
| | |||
[[:Category:Kohara_Phage:10H4|10H4]] | |||
| | |||
Kohara Phage | |||
| | |||
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=358 Genobase] | |||
| | | | ||
PMID:3038334 | PMID:3038334 | ||
| Line 302: | Line 311: | ||
est. P1 cotransduction: 62% <ref name='LIB:Nichols_linked_Tn'/> <br /> | est. P1 cotransduction: 62% <ref name='LIB:Nichols_linked_Tn'/> <br /> | ||
Synonyms:zbc-3105::Tn10, zbd-3105::Tn10 | Synonyms:zbc-3105::Tn10, zbd-3105::Tn10 | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
| Line 333: | Line 333: | ||
|- {{table_heading_style}} | |- {{table_heading_style}} | ||
!|Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 19:36, 21 September 2011
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
baeR |
|---|---|
| Mnemonic |
Bacterial Adaptive rEsponse |
| Synonyms |
ECK2075, b2079, JW2064[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
46.6 minutes, 46.6 minutes |
MG1655: 2162300..2163022 |
||
|
NC_012967: 2097384..2098106 |
||||
|
NC_012759: 2054783..2055505 |
||||
|
W3110 |
|
W3110: 2166413..2167135 |
||
|
DH10B: 2253308..2254030 |
||||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔbaeR (Keio:JW2064) |
deletion |
deletion |
| ||||
| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW2064 |
Plasmid clone |
Status:Clone OK Primer 1:GCCACCGAGTTACCAATCGACGA Primer 2:CCAACGATGCGGCAGGCGTCGGC | |
|
Kohara Phage |
|||
|
Kohara Phage |
|||
|
zef-3129::Tn10 |
Linked marker |
est. P1 cotransduction: % [6] | |
|
Linked marker |
est. P1 cotransduction: 62% [6] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
<protect>
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 4.0 4.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).