lpoB:Expression: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
Newer edit →
moved ycfM:Expression to lpoB:Expression: July 2011 Gene-Name Updates
 
No edit summary
Line 1: Line 1:
#REDIRECT [[lpoB:Expression]]
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|ycfM}}{{Tab|Gene|ycfM}}{{Tab|Gene Product(s)|ycfM}}{{Tab On|Expression|ycfM}}{{Tab|Evolution|ycfM}}{{Tab|On One Page|ycfM}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Overview|Overview]]
|{{Sub}}[[#Transcription and Transcriptional Regulation|Transcription]]
|{{Sub}}[[#Translation and Regulation of Translation|Translation]]
|{{Sub}}[[#Turnover and Regulation of Turnover|Turnover]]
|{{Sub}}[[#Experimental|Experimental]]
|{{Sub}}[[#Links| Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
===Overview===
{{Expression_overview_placeholder}}
 
 
==Cellular Levels==
{{BacktoTop}}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.35332.W49c03b9caa35b-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Help Cellular levels}}
{|  id="W49c03b9caa35b"  class=" tableEdit MoleculesPerCellTable" 
|- align='left' bgcolor='#CCCCFF'
!|Molecule!!Organism or Strain!!Value!!Units!!Experimental Conditions!!Assay used!!Notes!!Reference(s)
|-
|
Protein
|
''E. coli'' K-12 MC4100
|
4.53E+02
|
molecules/cell
|
*Medium:  median data from rich and minimal media
*Temperature (°C):  37
*Growth Rate(min): 
*other:
|
emPAI
|
 
|
PMID:18304323
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.35332.W49c03b9caa35b&page=35332&pagename={{FULLPAGENAMEE}}&type=0&template=MoleculesPerCellTable edit table]</span> || || || || || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.35332.W49c03b9caa35b-->
 
===Notes===
 
==Transcription and Transcriptional Regulation==
{{BacktoTop}}
<protect>
{|{{Prettytable}}
|-
|<!--box uid=421aa90e079fa326b6494f812ad13e79.35332.B46ab4afa264dc-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{expression_transcription_help}}
{|  id="B46ab4afa264dc"  class=" tableEdit Expression_operons_table" 
|- {{table heading style}}
!|Transcription unit(s)
|-
|
[[:Category:Txn_unit:hinT|hinT]]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.35332.B46ab4afa264dc&page=35332&pagename={{FULLPAGENAMEE}}&type=&template=Expression_operons_table edit table]</span>
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.35332.B46ab4afa264dc-->||{{RegulonDBfig|ECK120003161.jpg|YCFM}}
|}
 
<!--Transcription_notes--></protect>
===Notes===
{{Expression_transcription_placeholder}}
 
==Translation and Regulation of Translation==
{{BacktoTop}}
<protect><gbrowseImage>
name=NC_000913:1161841..1161881
source=MG1655
type=Gene+DNA_+Protein
preset=Nterminus
</gbrowseImage>
{{Nterm_closeup}}
 
<!--Translation_notes--></protect>
===Notes===
{{Expression_translation_placeholder}}
 
==Turnover and Regulation of Turnover==
<!--Turnover_notes--></protect>
 
===Notes===
{{Expression_turnover_placeholder}}
 
==Experimental==
{{BacktoTop}}
<protect>
<big>'''Mutations Affecting Expression'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.35332.B46ab4afae1183-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Expression_allele_table_help}}
{|  id="B46ab4afae1183"  class=" tableEdit Expression_allele_table" 
|- {{table_heading_style}}
!|Allele Name!!Mutation!!Phenotype!!Reference
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.35332.B46ab4afae1183&page=35332&pagename={{FULLPAGENAMEE}}&type=&template=Expression_allele_table edit table]</span> || || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.35332.B46ab4afae1183-->
 
 
<big>'''Expression Studies'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.35332.P46ab4afb554f9-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Expression_studies_table_help}}
{|  id="P46ab4afb554f9"  class=" tableEdit Expression_studies_table" 
|- {{table heading style}}
!|Type!!Reference!!Notes
|-
|
microarray
|
[[geoprofiles:b1105|GEO Profiles:b1105]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
|
NCBI GEO profiles for ''ycfM''
|-
|
microarray
|
[http://genexpdb.ou.edu/index.php?query=b1105 GenExpDB:b1105] ([[EcoliGenExpDB|EcoliWiki Page]])
|
Summary of data for ycfM from multiple microarray studies 
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.35332.P46ab4afb554f9&page=35332&pagename={{FULLPAGENAMEE}}&type=&template=Expression_studies_table edit table]</span> || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.35332.P46ab4afb554f9-->
 
 
<big>'''Expression Resources'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.35332.E46ab4afbbda84-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Expression_resource_table_help}}
{|  id="E46ab4afbbda84"  class=" tableEdit Expression_resource_table" 
|- {{table heading style}}
!|Resource Name!!Resource Type!!Description!!Source!!Notes
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.35332.E46ab4afbbda84&page=35332&pagename={{FULLPAGENAMEE}}&type=&template=Expression_resource_table edit table]</span> || || || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.35332.E46ab4afbbda84-->
 
<protect><!--Expression_experimental_notes--></protect>
===Notes===
 
 
==Accessions Related to ''ycfM'' Expression==
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.35332.L46ab4afc3a162-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="L46ab4afc3a162"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6565 EcoCyc:G6565]
|
|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB3205 EchoBASE:EB3205]
|
|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b1105 EcoliGenExpDB:b1105]
|
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG13431 EcoGene:EG13431]
|
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.35332.L46ab4afc3a162&page=35332&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.35332.L46ab4afc3a162-->
 
<protect><!--Accessions_notes--></protect>
===Notes===
 
 
==Links==
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.35332.H46a7b3c36f910-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|  id="H46a7b3c36f910"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
!|Name!!URL!!Comments
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.35332.H46a7b3c36f910&page=35332&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.35332.H46a7b3c36f910-->
 
<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Txn_unit:hinT]]

Revision as of 21:55, 30 July 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

4.53E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Growth Rate(min):
  • other:

emPAI

PMID:18304323[1]

edit table

Notes

Transcription and Transcriptional Regulation

[back to top]


See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

hinT

edit table
Figure courtesy of RegulonDB


Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


<gbrowseImage> name=NC_000913:1161841..1161881 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.


Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1105 (EcoliWiki Page)

NCBI GEO profiles for ycfM

microarray

GenExpDB:b1105 (EcoliWiki Page)

Summary of data for ycfM from multiple microarray studies

edit table


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
edit table

<protect>

Notes

Accessions Related to ycfM Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6565

EchoBASE (EcoliWiki Page)

EchoBASE:EB3205

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1105

EcoGene (EcoliWiki Page)

EcoGene:EG13431


edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=lpoB:Expression&oldid=1282311"