fruB:Gene: Difference between revisions

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!{{table_heading_style}} |Synonyms
!{{table_heading_style}} |Synonyms
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''ECK2162, b2169, JW2156, fruF, fpr, G415''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK2162, b2169, JW2156, fruF, G415''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!CGSC Mutation ID #
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!Resource!!Resource Type!!Source!!Notes/Reference
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JW2156
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Plasmid clone
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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[[PMID:16769691]]<ref name=PMID:16769691/>
Status:Clone OK
Primer 1:GCCTTCCAGTTATCCGTACAGGA
Primer 2:CCTGCGCCCTCCCCAAGACCAGC
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==Links==
==Links==
 
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__NOTOC__
__NOTOC__
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[[Category:Gene List:MG1655]][[Category:Gene List:W3110]][[Category:Genes in the Keio knockout collection]][[Category:Genes in the ASKA clone collection]]</protect></noinclude>

Revision as of 06:59, 25 July 2007


Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

Standard name

fruB

Mnemonic
Synonyms

ECK2162, b2169, JW2156, fruF, G415[1][2]

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

48.72 minutes 

MG1655: 2261517..2260387
gbrowse_img.php?coord=2259387..2262517&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 2266829..2265699
gbrowse_img.php?coord=2264699..2267829&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

Feature type Location Description
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference CGSC Mutation ID #

 

 

 

 

 

 

 

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Resources

Resource Resource Type Source Notes/Reference

JW2156

Plasmid clone

Shigen

PMID:16769691[3]

Status:Clone OK

Primer 1:GCCTTCCAGTTATCCGTACAGGA

Primer 2:CCTGCGCCCTCCCCAAGACCAGC

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7990

EchoBASE (EcoliWiki Page)

EchoBASE:EB0005

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2169

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C2704

EcoGene (EcoliWiki Page)

EcoGene:EG10005

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:FRUB

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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References

See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
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