matC:Gene: Difference between revisions

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Revision as of 21:12, 26 July 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

matC

Mnemonic

Meningitis-Associated

Synonyms

yagY, ECK0291, b0292, JW0286[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

6.65 minutes 

MG1655: 309250..308582
<gbrowseImage> name=NC_000913:308582..309250 source=ecoli preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 279540..280208
<gbrowseImage> name=NC_012967:279540..280208 source=REL606 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 309250..308582
<gbrowseImage> name=AC_000091:308582..309250 source=ecoli_W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 284800..284132
<gbrowseImage> name=NC_010473:284132..284800 source=ecoli_DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

yagY::Tn5KAN

PMID:12519969[3]

ASAP

At position 426 in Minus orientation, does not contain plasmid pKD46.
ASAP strain name: FB20130

yagY::Tn5KAN

PMID:12519969[3]

ASAP

At position 426 in Minus orientation, contains plasmid pKD46.
ASAP strain name: FB20131

ΔmatC736::kan

PMID:16738554[4]

CGSC:106236


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[5]

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6163

EchoBASE (EcoliWiki Page)

EchoBASE:EB3334

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0292

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C0403

EcoGene (EcoliWiki Page)

EcoGene:EG13564

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YAGY


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
  4. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

Categories

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