kilR:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php
Convert to gbrowse_img.php extension.
Line 75: Line 75:
30.52 minutes 
30.52 minutes 
|
|
MG1655: 1416253..1416032<br />{{GBrowseFigureByCoord|1416032|1416253|ecoli|MG1655}}
MG1655: 1416253..1416032<br /><gbrowseImage>
name=NC_000913:1416032..1416253
source=ecoli
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12155 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12155 EcoCyc]
Line 89: Line 94:


|
|
NC_012967: 1415178..1415399<br />{{GBrowseFigureByCoord|1415178|1415399|REL606|NC_012967}}
NC_012967: 1415178..1415399<br /><gbrowseImage>
name=NC_012967:1415178..1415399
source=REL606
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|REL606|NC_012967|1415178|1415399|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|1415178|1415399|GBrowse (REL606)}}
Line 100: Line 110:


|
|
NC_012759: 1308091..1308312<br />{{GBrowseFigureByCoord|1308091|1308312|BW2952|NC_012759}}
NC_012759: 1308091..1308312<br /><gbrowseImage>
name=NC_012759:1308091..1308312
source=BW2952
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|BW2952|012759|1308091|NC_1308312|GBrowse (BW2952)}}
{{GBrowseLink|BW2952|012759|1308091|NC_1308312|GBrowse (BW2952)}}
Line 111: Line 126:
&nbsp;
&nbsp;
|
|
W3110: 1419943..1419722<br />{{GBrowseFigureByCoord|1419722|1419943|ecoli_W3110|W3110}}
W3110: 1419943..1419722<br /><gbrowseImage>
name=AC_000091:1419722..1419943
source=ecoli_W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|1418722|1420943|GBrowse(W3110)}}  
{{GBrowseLink|ecoli_W3110|AC_000091|1418722|1420943|GBrowse(W3110)}}  
Line 122: Line 142:


|
|
DH10B: 1505649..1505428<br />{{GBrowseFigureByCoord|1505428|1505649|ecoli_DH10B|DH10B}}
DH10B: 1505649..1505428<br /><gbrowseImage>
name=NC_010473:1505428..1505649
source=ecoli_DH10B
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_DH10B|NC_010473|1504986|1506091|GBrowse(DH10B)}}
{{GBrowseLink|ecoli_DH10B|NC_010473|1504986|1506091|GBrowse(DH10B)}}

Revision as of 21:07, 26 July 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

kilR

Mnemonic

Killing function

Synonyms

kil, ECK1350, b1352, JW1347, ydaD[1][2]

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

30.52 minutes 

MG1655: 1416253..1416032
<gbrowseImage> name=NC_000913:1416032..1416253 source=ecoli preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1415178..1415399
<gbrowseImage> name=NC_012967:1415178..1415399 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1308091..1308312
<gbrowseImage> name=NC_012759:1308091..1308312 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1419943..1419722
<gbrowseImage> name=AC_000091:1419722..1419943 source=ecoli_W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1505649..1505428
<gbrowseImage> name=NC_010473:1505428..1505649 source=ecoli_DH10B preset=GeneLocation </gbrowseImage>

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[3]

Status:

Primer 1:

Primer 2:

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12155

EchoBASE (EcoliWiki Page)

EchoBASE:EB2075

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1352

EcoGene (EcoliWiki Page)

EcoGene:EG12155

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YDAD

ASAP (EcoliWikiPage)

ASAP:ABE-0004537


edit table


Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=kilR:Gene&oldid=1177440"