cynS:Gene Product(s): Difference between revisions
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[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0009440_!_cyanate catabolic process]][[Category:GO:0006807_!_nitrogen compound metabolic process]][[Category:GO:0006805_!_xenobiotic metabolic process]][[Category:GO:0008824_!_cyanate hydratase activity]][[Category:Complex:cyanase]][[Category:Products with structures in PDB]] | [[Category:GO:0005737_!_cytoplasm]][[Category:GO:0009440_!_cyanate catabolic process]][[Category:GO:0006807_!_nitrogen compound metabolic process]][[Category:GO:0006805_!_xenobiotic metabolic process]][[Category:GO:0008824_!_cyanate hydratase activity]][[Category:Complex:cyanase]][[Category:Products with structures in PDB]] | ||
[[Category:Pfam:PF02560_!_Cyanate lyase C-terminal domain]] | |||
Revision as of 21:17, 24 June 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
CynS |
|---|---|
| Synonyms |
cyanate aminohydrolase[1], B0340[2][1], Cnt[2][1], CyaN[2][1], CynS[2][1], cyanate hydrolase[2][1], cyanase[2][1], cyanate C-N-lyase[2][1] |
| Product description |
Component of cyanase[2]; cyanase dimer[3]; cyanase[3] Cyanate aminohydrolase[4] |
| EC number (for enzymes) | |
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005737 |
cytoplasm |
IDA: Inferred from Direct Assay |
C |
Seeded from Riley et al 2006 [1]. |
complete | |||
| GO:0003677 |
DNA binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0008824 |
cyanate hydratase activity |
GOA:hamap |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0008824 |
cyanate hydratase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0008824 |
cyanate hydratase activity |
GOA:spec |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016836 |
hydro-lyase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Subunits of cyanase |
could be indirect |
||
|
Protein |
prs |
Experiment(s):EBI-1136296 | ||
|
Protein |
dnaK |
Experiment(s):EBI-1136296 | ||
|
Protein |
gshB |
Experiment(s):EBI-1136296 | ||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Source | Notes |
|---|---|---|---|---|
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Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MIQSQINRNI RLDLADAILL SKAKKDLSFA EIADGTGLAE AFVTAALLGQ QALPADAARL VGAKLDLDED SILLLQMIPL RGCIDDRIPT DPTMYRFYEM LQVYGTTLKA LVHEKFGDGI ISAINFKLDV KKVADPEGGE RAVITLDGKY LPTKPF |
|---|---|
| Length |
156 |
| Mol. Wt |
17.049 kDa |
| pI |
4.8 (calculated) |
| Extinction coefficient |
5,960 - 6,085 (calc based on 4 Y, W, and 1 C residues) |
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Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
|
Structure figures
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Kozliak, EI et al. (1994) Expression of proteins encoded by the Escherichia coli cyn operon: carbon dioxide-enhanced degradation of carbonic anhydrase. J. Bacteriol. 176 5711-7 PubMed
- ↑ 6.0 6.1 6.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
Categories
- GO:0005737 ! cytoplasm
- GO:0003677 ! DNA binding
- GO:0008824 ! cyanate hydratase activity
- GO:0016836 ! hydro-lyase activity
- Proteins
- GO:0009440 ! cyanate catabolic process
- GO:0006807 ! nitrogen compound metabolic process
- GO:0006805 ! xenobiotic metabolic process
- Complex:cyanase
- Products with structures in PDB
- Pfam:PF02560 ! Cyanate lyase C-terminal domain