tauA:Gene Product(s): Difference between revisions

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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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GO:0005215
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transporter activity
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR001638
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F
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Seeded from [[EcoCyc]] (v14.0)
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GO:0005215
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transporter activity
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR007210
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F
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Seeded from [[EcoCyc]] (v14.0)
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GO:0006810
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transport
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR001638
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P
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Seeded from [[EcoCyc]] (v14.0)
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GO:0006810
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transport
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR007210
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P
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Seeded from [[EcoCyc]] (v14.0)
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GO:0006810
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transport
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0813
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P
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Seeded from [[EcoCyc]] (v14.0)
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GO:0030288
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outer membrane-bounded periplasmic space
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GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR001638
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C
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Seeded from [[EcoCyc]] (v14.0)
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GO:0042597
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periplasmic space
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GOA:spkw<br />SP_KW:GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0574
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C
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Seeded from [[EcoCyc]] (v14.0)
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GO:0042597
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periplasmic space
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GO_REF:0000023
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IEA: Inferred from Electronic Annotation
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SP_SL:SL-0200
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C
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Seeded from [[EcoCyc]] (v14.0)
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Revision as of 17:24, 11 June 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

TauA

Synonyms

taurine transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B0365[2][1], YaiR[2][1], SsiA[2][1], TauA[2][1], taurine transport system periplasmic protein[2][1]

Product description

TauA[2][3];

Component of TauA/TauB/TauC ABC transporter[2]; taurine ABC transporter[3]

Periplasmic taurine binding protein[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

F

Seeded from EcoCyc (v14.0)

GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007210

F

Seeded from EcoCyc (v14.0)

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

P

Seeded from EcoCyc (v14.0)

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007210

P

Seeded from EcoCyc (v14.0)

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

GO:0030288

outer membrane-bounded periplasmic space

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

C

Seeded from EcoCyc (v14.0)

GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)


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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of TauA/TauB/TauC ABC transporter

could be indirect

Protein

tnaA

PMID:16606699[5]

Experiment(s):EBI-1136381
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

Periplasm

PMID:8774726[6]

EchoLocation:tauA


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MNVFIPEYCS HNKTGEQTIM AISSRNTLLA ALAFIAFQAQ AVNVTVAYQT SAEPAKVAQA
DNTFAKESGA TVDWRKFDSG ASIVRALASG DVQIGNLGSS PLAVAASQQV PIEVFLLASK
LGNSEALVVK KTISKPEDLI GKRIAVPFIS TTHYSLLAAL KHWGIKPGQV EIVNLQPPAI
IAAWQRGDID GAYVWAPAVN ALEKDGKVLT DSEQVGQWGA PTLDVWVVRK DFAEKHPEVV
KAFAKSAIDA QQPYIANPDV WLKQPENISK LARLSGVPEG DVPGLVKGNT YLTPQQQTAE
LTGPVNKAII DTAQFLKEQG KVPAVANDYS QYVTSRFVQ
Length

339

Mol. Wt

36.458 kDa

pI

6.9 (calculated)

Extinction coefficient

50,420 - 50,545 (calc based on 8 Y, 7 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-22

UniProt Manual:Signal Peptides

UniProt:Q47537


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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=tauA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:TAUA-MONOMER

UniProt (EcoliWiki Page)

UniProt:Q47537

PFAM (EcoliWiki Page)

PFAM:PF04069

RefSeq (EcoliWiki Page)

RefSeq:NP_414899


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Quadroni, M et al. (1996) Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli. Eur. J. Biochem. 239 773-81 PubMed

Categories

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