opgB:Gene Product(s): Difference between revisions

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touch the Product_motif_table table.
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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GO:0008152
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metabolic process
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GO_REF:0000002<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR000917<br />InterPro:IPR001952
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P
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
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GO:0008484
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sulfuric ester hydrolase activity
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR000917
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0008960
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phosphatidylglycerol-membrane-oligosaccharide glycerophosphotransferase activity
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GO_REF:0000003<br />GO_REF:0000020
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IEA: Inferred from Electronic Annotation
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EC:2.7.8.20<br />HAMAP:MF_01070
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F
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
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GO:0009250
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glucan biosynthetic process
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GO_REF:0000020
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IEA: Inferred from Electronic Annotation
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HAMAP:MF_01070
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P
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0016020
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membrane
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GO_REF:0000004<br />GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0397<br />SP_KW:KW-0472
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C
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
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GO:0016021
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integral to membrane
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0812
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C
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0016740
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transferase activity
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0808
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0003824
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catalytic activity
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GO_REF:0000002<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR017849<br />InterPro:IPR017850
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0005886
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plasma membrane
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GO_REF:0000020<br />GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
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IEA: Inferred from Electronic Annotation
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HAMAP:MF_01070<br />SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
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C
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0008654
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phospholipid biosynthetic process
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P
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Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
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required fields missing 
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GO:0006970
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response to osmotic stress
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P
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Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
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required fields missing 


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Revision as of 21:42, 10 June 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

OpgB

Synonyms

phosphoglycerol transferase I[1], B4359[2][1], YjjO product[2][1], MdoB[2][1]

Product description

phosphoglycerol transferase I[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

plasma membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MLIYAWKAGR NTWWFAATLT VLGLFVVLNI TLFASDYFTG DGINDAVLYT LTNSLTGAGV
SKYILPGIGI VLGLTAVFGA LGWILRRRRH HPHHFGYSLL ALLLALGSVD ASPAFRQITE
LVKSQSRDGD PDFAAYYKEP SKTIPDPKLN LVYIYGESLE RTYFDNEAFP DLTPELGALK
NEGLDFSHTQ QLPGTDYTIA GMVASQCGIP LFAPFEGNAS ASVSSFFPQN ICLGDILKNS
GYQNYFVQGA NLRFAGKDVF LKSHGFDHLY GSEELKSVVA DPHYRNDWGF YDDTVLDEAW
KKFEELSRSG QRFSLFTLTV DTHHPDGFIS RTCNRKKYDF DGKPNQSFSA VSCSQENIAT
FINKIKASPW FKDTVIVVSS DHLAMNNTAW KYLNKQDRNN LFFVIRGDKP QQETLAVKRN
TMDNGATVLD ILGGDNYLGL GRSSLSGQSM SEIFLNIKEK TLAWKPDIIR LWKFPKEMKE
FTIDQQKNMI AFSGSHFRLP LLLRVSDKRV EPLPESEYSA PLRFQLADFA PRDNFVWVDR
CYKMAQLWAP ELALSTDWCV SQGQLGGQQI VQHVDKTTWQ GKTAFKDTVI DMARYKGNVD
TLKIVDNDIR YKADSFIFNV AGAPEEVKQF SGISRPESWG RWSNAQLGDE VKIEYKHPLP
KKFDLVITAK AYGNNASRPI PVRVGNEEQT LVLGNEVTTT TLHFDNPTDA DTLVIVPPEP
VSTNEGNILG HSPRKLGIGM VEIKVVEREG
Length

750

Mol. Wt

84.117 kDa

pI

6.6 (calculated)

Extinction coefficient

125,250 - 126,000 (calc based on 25 Y, 16 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

tmhmm.php?gene=mdoB&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=mdoB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:PGLYCEROLTRANSI-MONOMER

UniProt (EcoliWiki Page)

UniProt:P39401

PFAM (EcoliWiki Page)

PFAM:PF00884

RefSeq (EcoliWiki Page)

RefSeq:NP_418779


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

Categories

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