kilR:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Data loaded by TableEdit_Loader.
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php
Line 93: Line 93:
|
|
{{GBrowseFastaLink|REL606|NC_012967|1415178|1415399|FASTA Dump}}  
{{GBrowseFastaLink|REL606|NC_012967|1415178|1415399|FASTA Dump}}  
|-
|
[[BW2952]]
|
|
NC_012759: 1308091..1308312<br />{{GBrowseFigureByCoord|1308091|1308312|BW2952|NC_012759}}
|
{{GBrowseLink|BW2952|012759|1308091|NC_1308312|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|1308091|NC_1308312|FASTA Dump}}
|-  
|-  
|
|
Line 115: Line 126:
|
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|1504986|1506091|FASTA Dump}}  
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|1504986|1506091|FASTA Dump}}  
|-
|
[[BW2952]]
|
|
NC_012759: 1308091..1308312<br />{{GBrowseFigureByCoord|1308091|1308312|BW2952|NC_012759}}
|
{{GBrowseLink|BW2952|012759|1308091|NC_1308312|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|1308091|NC_1308312|FASTA Dump}}


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 147: Line 147:
{|  id="K46a9c555d0a21"  class=" tableEdit Gene_sequence_features_table"   
{|  id="K46a9c555d0a21"  class=" tableEdit Gene_sequence_features_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13277.K46a9c555d0a21&page=13277&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13277.K46a9c555d0a21&page=13277&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.13277.K46a9c555d0a21-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.13277.K46a9c555d0a21-->

Revision as of 22:46, 10 May 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

kilR

Mnemonic

Killing function

Synonyms

kil, ECK1350, b1352, JW1347, ydaD[1][2]

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

30.52 minutes 

MG1655: 1416253..1416032
gbrowse_img.php?coord=1416032..1416253&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 1415178..1415399
gbrowse_img.php?coord=1415178..1415399&genome=REL606&name=NC_012967&trackset=0&width=300&.png

BW2952

NC_012759: 1308091..1308312
gbrowse_img.php?coord=1308091..1308312&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

W3110

 

W3110: 1419943..1419722
gbrowse_img.php?coord=1419722..1419943&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 1505649..1505428
gbrowse_img.php?coord=1505428..1505649&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[3]

Status:

Primer 1:

Primer 2:

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12155

EchoBASE (EcoliWiki Page)

EchoBASE:EB2075

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1352

EcoGene (EcoliWiki Page)

EcoGene:EG12155

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YDAD

ASAP (EcoliWikiPage)

ASAP:ABE-0004537


edit table


Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=kilR:Gene&oldid=1083234"