EcoliWiki:About: Difference between revisions
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'''EcoliWiki''', a component of [[EcoliHub]], is a wiki-based system for finding, editing, and adding information about ''E. coli'' K-12 and other model organism strains of ''E. coli''. EcoliWiki is being constructed to include information about bacteriophage, plasmids, and mobile genetic elements. | |||
==Purpose & Aims== | |||
==Content== | |||
Most of the ''E. coli'' information was initially seeded with a subset of information from parsing [[EcoCyc]] data dumps. For phage λ and the F plasmid, [[Genbank]] accessions were converted to [http://www.sanger.ac.uk/Software/formats/GFF/ GFF], which was parsed into the appropriate tables. Other sources of content include: | |||
* user additions | |||
* monthly addition of annotations from [[EcoCyc]] | |||
* structural data from the [[PDB]] | |||
* domains and motif information from [[InterPro]] | |||
* various databases including [[EcoGene]], [[RegulonDB]], [[Genbank]], [[GenoBase]], [[ASAP]] | |||
* many many scientific papers | |||
==Statistics== | |||
Ecoliwiki is run off of [http://www.mediawiki.org Mediawiki] version {{CURRENTVERSION}} and currently has {{NUMBEROFPAGES}} pages. You can view other statistics on [[Special:Statistics]]. | |||
===Web Services/API=== | |||
EcoliWiki provides REST web services as part of the EcoliHub Web Services infrastructure project (See: [http://128.10.4.23/index.php?option=com_wrapper&Itemid=217 EcoliHub Workbench]). | |||
* keyword - currently searches based on a single keyword | |||
* gene - prototype to extract gene details from the wiki | |||
* is_edited - shows numbers of human revisions to EcoliWiki pages. | |||
For more detail about the EcoliWiki web services, see [[Help:Web Services]]. | |||
==References== | |||
<references/> | |||
Revision as of 05:45, 22 April 2010
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EcoliWiki, a component of EcoliHub, is a wiki-based system for finding, editing, and adding information about E. coli K-12 and other model organism strains of E. coli. EcoliWiki is being constructed to include information about bacteriophage, plasmids, and mobile genetic elements.
Purpose & Aims
Content
Most of the E. coli information was initially seeded with a subset of information from parsing EcoCyc data dumps. For phage λ and the F plasmid, Genbank accessions were converted to GFF, which was parsed into the appropriate tables. Other sources of content include:
- user additions
- monthly addition of annotations from EcoCyc
- structural data from the PDB
- domains and motif information from InterPro
- various databases including EcoGene, RegulonDB, Genbank, GenoBase, ASAP
- many many scientific papers
Statistics
Ecoliwiki is run off of Mediawiki version 1.43.11 and currently has 167,294 pages. You can view other statistics on Special:Statistics.
Web Services/API
EcoliWiki provides REST web services as part of the EcoliHub Web Services infrastructure project (See: EcoliHub Workbench).
- keyword - currently searches based on a single keyword
- gene - prototype to extract gene details from the wiki
- is_edited - shows numbers of human revisions to EcoliWiki pages.
For more detail about the EcoliWiki web services, see Help:Web Services.