rpoC:Gene Product(s): Difference between revisions

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touch the Product_motif_table table.
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GO:0006350
GO:0006350
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transcription
transcription<input name="field[2]" type="hidden" value="transcription" />
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GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004

Revision as of 00:14, 9 April 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RpoC

Synonyms

RNA polymerase, beta prime subunit[1], B3988[2][1], TabB[2][1], RpoC[2][1]

Product description

RNA polymerase, β' subunit[2][3];

Component of RNA polymerase, core enzyme[2][3]; RNA polymerase sigma 24[2][3]; RNA polymerase sigma 38[2][3]; RNA polymerase sigma32[2]; RNA polymerase sigma 32[3]; RNA polymerase sigma54[2]; RNA polymerase sigma 54[3]; RNA polymerase sigma70[2]; RNA polymerase sigma 70[3]; RNA polymerase sigma 19[3]; RNA polymerase sigma 28[3]

RNA polymerase, beta' subunit; binds Zn(II)[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016779

nucleotidyltransferase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0548

F

Seeded from EcoCyc [5]

complete

GO:0016740

transferase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc [5]

complete

GO:0006351

transcription, DNA-dependent

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01322

P

Seeded from EcoCyc [5]

complete

GO:0006350

transcription<input name="field[2]" type="hidden" value="transcription" />

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000722
InterPro:IPR006592
InterPro:IPR007066
InterPro:IPR007080
InterPro:IPR007081
InterPro:IPR007083
InterPro:IPR012754
SP_KW:KW-0804

P

Seeded from EcoCyc [5]

complete

GO:0005634

nucleus

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000722

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0003899

DNA-directed RNA polymerase activity

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000003
GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR000722
InterPro:IPR006592
InterPro:IPR007066
InterPro:IPR007080
InterPro:IPR007081
InterPro:IPR007083
InterPro:IPR012754
EC:2.7.7.6
SP_KW:KW-0240
HAMAP:MF_01322

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0003677

DNA binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR000722
InterPro:IPR006592
InterPro:IPR007066
InterPro:IPR007080
InterPro:IPR007081
InterPro:IPR007083
InterPro:IPR012754
HAMAP:MF_01322

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0005515

protein binding

PMID:15690043[7]
PMID:15690043[7]

IPI: Inferred from Physical Interaction

UniProtKB:P0A6Z3
UniProtKB:P69441

F

Seeded from EcoCyc [5]

complete

GO:0005737

cytoplasm

PMID:16858726[8]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [5]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of RNA polymerase, core enzyme

could be indirect

Protein

sdhA

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

ycgE

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

ftsK

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

rhsD

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

yagS

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

lon

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

dnaK

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

metH

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

priA

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

rpoA

PMID:16606699[9]

Experiment(s):EBI-1147184, EBI-1145418

Protein

ydfE

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

htpG

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

rplB

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

rpsA

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

clpB

PMID:16606699[9]

Experiment(s):EBI-1147184

Protein

malP

PMID:15690043[7]

Experiment(s):EBI-879261

Protein

rplB

PMID:15690043[7]

Experiment(s):EBI-879261, EBI-883046

Protein

rplC

PMID:15690043[7]

Experiment(s):EBI-879261, EBI-883046

Protein

rplM

PMID:15690043[7]

Experiment(s):EBI-879261

Protein

rplO

PMID:15690043[7]

Experiment(s):EBI-879261

Protein

rplQ

PMID:15690043[7]

Experiment(s):EBI-879261

Protein

rpoA

PMID:15690043[7]

Experiment(s):EBI-879261, EBI-879354, EBI-883046, EBI-883271

Protein

rpoB

PMID:15690043[7]

Experiment(s):EBI-879261, EBI-879304, EBI-883046, EBI-883170

Protein

rpsD

PMID:15690043[7]

Experiment(s):EBI-879261, EBI-883046

Protein

rpsE

PMID:15690043[7]

Experiment(s):EBI-879261, EBI-883046

Protein

rpsG

PMID:15690043[7]

Experiment(s):EBI-879261, EBI-883046

Protein

rpsM

PMID:15690043[7]

Experiment(s):EBI-879261

Protein

ylbH

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

yfdV

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

cysQ

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

flxA

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

focA

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

hemC

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

hupA

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

rplI

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

rplP

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

rplS

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

rplV

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

rplX

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

rpsC

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

rpsJ

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

rpsP

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

ygcP

PMID:15690043[7]

Experiment(s):EBI-883046, EBI-891354

Protein

yjbH

PMID:15690043[7]

Experiment(s):EBI-883046

Protein

Subunits of RNA polymerase sigma 24

could be indirect

Protein

Subunits of RNA polymerase sigma 38

could be indirect

Protein

Subunits of RNA polymerase sigma32

could be indirect

Protein

Subunits of RNA polymerase sigma54

could be indirect

Protein

Subunits of RNA polymerase sigma70

could be indirect

Protein

Subunits of RNA polymerase sigma 19

could be indirect

Protein

Subunits of RNA polymerase sigma 28

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL
PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERQQIL TEEQYLDALE EFGDEFDAKM
GAEAIQALLK SMDLEQECEQ LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERLYRSG
LASLHARVKV RITEYEKDAN GELVAKTSLK DTTVGRAILW MIVPKGLPYS IVNQALGKKA
ISKMLNTCYR ILGLKPTVIF ADQIMYTGFA YAARSGASVG IDDMVIPEKK HEIISEAEAE
VAEIQEQFQS GLVTAGERYN KVIDIWAAAN DRVSKAMMDN LQTETVINRD GQEEKQVSFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHEGI MMTPVIEGGD VKEPLRDRVL
GRVTAEDVLK PGTADILVPR NTLLHEQWCD LLEENSVDAV KVRSVVSCDT DFGVCAHCYG
RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSIKL
SNVKSVVNSS GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVLAKGDGEQ VAGGETVANW
DPHTMPVITE VSGFVRFTDM IDGQTITRQT DELTGLSSLV VLDSAERTAG GKDLRPALKI
VDAQGNDVLI PGTDMPAQYF LPGKAIVQLE DGVQISSGDT LARIPQESGG TKDITGGLPR
VADLFEARRP KEPAILAEIS GIVSFGKETK GKRRLVITPV DGSDPYEEMI PKWRQLNVFE
GERVERGDVI SDGPEAPHDI LRLRGVHAVT RYIVNEVQDV YRLQGVKIND KHIEVIVRQM
LRKATIVNAG SSDFLEGEQV EYSRVKIANR ELEANGKVGA TYSRDLLGIT KASLATESFI
SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRAAGEAPA
APQVTAEDAS ASLAELLNAG LGGSDNE
Length

1,407

Mol. Wt

155.163 kDa

pI

7.1 (calculated)

Extinction coefficient

100,160 - 102,035 (calc based on 34 Y, 9 W, and 15 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rpoC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:RPOC-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0A8T7

UniProt (EcoliWiki Page)

UniProt:P0A8T7

PFAM (EcoliWiki Page)

PFAM:PF04997

RefSeq (EcoliWiki Page)

RefSeq:NP_418415


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 6.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 7.21 7.22 7.23 7.24 7.25 7.26 7.27 7.28 7.29 7.30 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  8. ↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
  9. ↑ 9.00 9.01 9.02 9.03 9.04 9.05 9.06 9.07 9.08 9.09 9.10 9.11 9.12 9.13 9.14 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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