kilR:Gene: Difference between revisions

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Automated update of mnemonics from EcoGene.
Added to the category for BW2952 genes.
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[[Category:Gene List:Rac prophage]]
[[Category:Gene List:Rac prophage]]
[[Category:kil genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:kil genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

Revision as of 18:08, 5 March 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

kilR

Mnemonic

Killing function

Synonyms

kil, ECK1350, b1352, JW1347, ydaD[1][2]


Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

30.52 minutes 

MG1655: 1416253..1416032
gbrowse_img.php?coord=1416032..1416253&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 1415178..1415399
gbrowse_img.php?coord=1415178..1415399&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 1419943..1419722
gbrowse_img.php?coord=1419722..1419943&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 1505649..1505428
gbrowse_img.php?coord=1505428..1505649&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png


Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description


Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments


Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[3]

Status:

Primer 1:

Primer 2:


Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12155

EchoBASE (EcoliWiki Page)

EchoBASE:EB2075

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1352

EcoGene (EcoliWiki Page)

EcoGene:EG12155

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YDAD

ASAP (EcoliWikiPage)

ASAP:ABE-0004537



Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

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