ptrA:Gene: Difference between revisions

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!align=left |Standard name
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''ptrA''  
''ptrA''
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!align=left |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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Protease III
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!align=left |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ptr, ECK2817, b2821, JW2789''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ptr, ECK2817, b2821, JW2789''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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Loss of activity and of Zn-binding
Loss of activity and of Zn-binding
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seeded from [http://www.uniprot.org/uniprot/P05458 UniProt:P05458]
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ptrAE204Q
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E204Q
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No loss of activity
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ptrAE204Q
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E204Q
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No loss of activity
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seeded from [http://www.uniprot.org/uniprot/P05458 UniProt:P05458]


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Revision as of 21:36, 25 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ptrA

Mnemonic

Protease III

Synonyms

ptr, ECK2817, b2821, JW2789[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

63.67 minutes 

MG1655: 2956906..2954018
gbrowse_img.php?coord=2954018..2956906&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 2850615..2853503
gbrowse_img.php?coord=2850615..2853503&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 2957540..2954652
gbrowse_img.php?coord=2954652..2957540&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 3050776..3047888
gbrowse_img.php?coord=3047888..3050776&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ptrAH88R

H88R

Loss of activity and of Zn-binding

seeded from UniProt:P05458

ptrAE162Q

E162Q

20% loss of activity

seeded from UniProt:P05458

ptrAE169Q

E169Q

Loss of activity and of Zn-binding

seeded from UniProt:P05458

ptrAE204Q

E204Q

No loss of activity

seeded from UniProt:P05458

ptrAE91Q

E91Q

Loss of activity

seeded from UniProt:P05458

ptrAH92R

H92R

Loss of activity and of Zn-binding

seeded from UniProt:P05458

ΔptrA746::kan

PMID:16738554[3]

CGSC:113619


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10786

EchoBASE (EcoliWiki Page)

EchoBASE:EB0779

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2821

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C3415

EcoGene (EcoliWiki Page)

EcoGene:EG10786

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:PTR

CGSC (EcoliWiki Page)

CGSC:351

ASAP (EcoliWikiPage)

ASAP:ABE-0009252


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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

Categories

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