gpmM:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Update TableEdit tables.
Automated update of mnemonics from EcoGene.
Line 34: Line 34:


|-
|-
!align=left |Standard name
!align=left {{table_heading_style}} |Standard name
||
||
''gpmM''  
''gpmM''
|-
|-
!align=left |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
||
||
 
Glycerol P mutase, Mn-dependent
|-
|-
!align=left |Synonyms
!align=left {{table_heading_style}} |Synonyms
||
||
''gpmI, ECK3602, b3612, JW3587, yibO, pmgI, gpmC, pgmI''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''gpmI, ECK3602, b3612, JW3587, yibO, pmgI, gpmC, pgmI''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
Line 66: Line 66:
****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|  id="E46a9fa5dd3602"  class=" tableEdit Gene_location_table"   
{|  id="E46a9fa5dd3602"  class=" tableEdit Gene_location_table"   
|-
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-  
|-  
Line 124: Line 124:
****************************************************************************************** -->{{Gene_sequence_features_help}}
****************************************************************************************** -->{{Gene_sequence_features_help}}
{|  id="Q46a9fa5e96441"  class=" tableEdit Gene_sequence_features_table"   
{|  id="Q46a9fa5e96441"  class=" tableEdit Gene_sequence_features_table"   
|-
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature type!!Location!!Description


Line 145: Line 145:
*  
*  
****************************************************************************************** -->{{Gene_alleles_help}}
****************************************************************************************** -->{{Gene_alleles_help}}
{|   id="K46a9fa5edfd39"  class=" tableEdit Gene_allele_table"   
{| {{Prettytable}}  id="K46a9fa5edfd39"  class=" tableEdit Gene_allele_table dataTable"   
|-
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-  
|-  
Line 219: Line 219:
****************************************************************************************** -->{{Gene_resources_help}}
****************************************************************************************** -->{{Gene_resources_help}}
{|  id="J46a9fa5fa2f0b"  class=" tableEdit Gene_resource_table"   
{|  id="J46a9fa5fa2f0b"  class=" tableEdit Gene_resource_table"   
|-
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
|-  
|-  
Line 256: Line 256:
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="Z46a9fa604d258"  class=" tableEdit Gene_accessions_table"   
{|  id="Z46a9fa604d258"  class=" tableEdit Gene_accessions_table"   
|-
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
Line 327: Line 327:
****************************************************************************************** -->
****************************************************************************************** -->
{|  id="X46a714d5bc690"  class=" tableEdit Links_table"   
{|  id="X46a714d5bc690"  class=" tableEdit Links_table"   
|-
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 21:15, 25 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

gpmM

Mnemonic

Glycerol P mutase, Mn-dependent

Synonyms

gpmI, ECK3602, b3612, JW3587, yibO, pmgI, gpmC, pgmI[1][2]

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

81.54 minutes 

MG1655: 3783283..3784827
gbrowse_img.php?coord=3783283..3784827&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 3726026..3727570
gbrowse_img.php?coord=3726026..3727570&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 3855155..3853611
gbrowse_img.php?coord=3853611..3855155&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

yibO

PMID:12519969[3]

ASAP

At position 1343 in Plus orientation, contains plasmid pKD46.
ASAP strain name: FB21341

yibO

PMID:12519969[3]

ASAP

At position 1343 in Plus orientation, does not contain plasmid pKD46.
ASAP strain name: FB21342

ΔgpmM724::kan

PMID:16738554[4]

CGSC:106202


edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[5]

Status:

Primer 1:

Primer 2:

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12296

EchoBASE (EcoliWiki Page)

EchoBASE:EB2204

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3612

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4438

EcoGene (EcoliWiki Page)

EcoGene:EG12296

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YIBO

ASAP (EcoliWikiPage)

ASAP:ABE-0011818


edit table


Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
  4. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=gpmM:Gene&oldid=1055866"