ybbW:Gene Product(s): Difference between revisions

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|-
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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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YbbW  
YbbW  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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predicted allantoin transporter<ref name='LIB:Riley_2006'/>, B0511<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AllP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbbW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted allantoin transporter<ref name='LIB:Riley_2006'/>, B0511<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AllP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbbW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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YbbW NCS1 Transporter<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
YbbW NCS1 Transporter<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Probable allantoin permease, glyoxylate-inducible or allantoin-inducible (anaerobic)<ref name='LIB:EcoGene'/>
Probable allantoin permease, glyoxylate-inducible or allantoin-inducible (anaerobic)<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|  id="I46aa34142bf3c"  class=" tableEdit GO_table_product dataTable"   
{|  id="I46aa34142bf3c"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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|-  
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*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
****************************************************************************************** -->{{Product_interactions_help}}
{|  id="E46aa3416b3897"  class=" tableEdit Product_interactions_table"   
{|  id="E46aa3416b3897"  class=" tableEdit Product_interactions_table dataTable"   
|-
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


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****************************************************************************************** -->{{Product_localization_help}}
****************************************************************************************** -->{{Product_localization_help}}
{|  id="R46a7c58d2f7ae"  class=" tableEdit Product_localization_table"   
{|  id="R46a7c58d2f7ae"  class=" tableEdit Product_localization_table"   
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|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes
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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=B0511-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=B0511-MONOMER at EcoCyc]  
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LKKRTTAEKT GEQKTIG</pre>  
LKKRTTAEKT GEQKTIG</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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437
437
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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46.684 kDa
46.684 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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8.7 (calculated)
8.7 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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73,340 - 73,965 (calc based on 16 Y, 9 W, and 5 C residues)
73,340 - 73,965 (calc based on 16 Y, 9 W, and 5 C residues)
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*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="I46aa3418cb23b"  class=" tableEdit Product_motif_table"   
{|  id="I46aa3418cb23b"  class=" tableEdit Product_motif_table dataTable"   
|-
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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****************************************************************************************** -->{{Product_resources_help}}
****************************************************************************************** -->{{Product_resources_help}}
{|  id="U46aa34196c1c0"  class=" tableEdit Product_resource_table"   
{|  id="U46aa34196c1c0"  class=" tableEdit Product_resource_table"   
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|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="E46aa3419b67cc"  class=" tableEdit Gene_accessions_table"   
{|  id="E46aa3419b67cc"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="D46a7c5918dc8e"  class=" tableEdit Links_table"   
{|  id="D46a7c5918dc8e"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 21:37, 23 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbbW

Synonyms

predicted allantoin transporter[1], B0511[2][1], AllP[2][1], YbbW[2][1]

Product description

YbbW NCS1 Transporter[2][3]

Probable allantoin permease, glyoxylate-inducible or allantoin-inducible (anaerobic)[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016021

integral to membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc [5]

complete

GO:0016020

membrane

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001248
InterPro:IPR012681
SP_KW:KW-0397
SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0015931

nucleobase, nucleoside, nucleotide and nucleic acid transport

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001248
InterPro:IPR012681

P

Seeded from EcoCyc [5]

complete

GO:0015205

nucleobase transmembrane transporter activity

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001248
InterPro:IPR012681

F

Seeded from EcoCyc [5]

complete

GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc [5]

complete

GO:0006144

purine base metabolic process

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0659

P

Seeded from EcoCyc [5]

complete

GO:0015292

uniporter activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0005886

plasma membrane

GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc [5]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

plasma membrane

C-terminus localized in the cytoplasm with 12 predicted transmembrane domains

Daley et al. (2005) [7]


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MVGGFFILGL STFSIMLAII LSAFFIAAVM VLNGAAGSKY GVPFAMILRA SYGVRGALFP
GLLRGGIAAI MWFGLQCYAG SLACLILIGK IWPGFLTLGG DFTLLGLSLP GLITFLIFWL
VNVGIGFGGG KVLNKFTAIL NPCIYIVFGG MAIWAISLVG IGPIFDYIPS GIQKAENGGF
LFLVVINAVV AVWAAPAVSA SDFTQNAHSF REQALGQTLG LVVAYILFAV AGVCIIAGAS
IHYGADTWNV LDIVQRWDSL FASFFAVLVI LMTTISTNAT GNIIPAGYQI AAIAPTKLTY
KNGVLIASII SLLICPWKLM ENQDSIYLFL DIIGGMLGPV IGVMMAHYFV VMRGQINLDE
LYTAPGDYKY YDNGFNLTAF SVTLVAVILS LGGKFIHFME PLSRVSWFVG VIVAFAAYAL
LKKRTTAEKT GEQKTIG
Length

437

Mol. Wt

46.684 kDa

pI

8.7 (calculated)

Extinction coefficient

73,340 - 73,965 (calc based on 16 Y, 9 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

tmhmm.php?gene=ybbW&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybbW taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:B0511-MONOMER

UniProt (EcoliWiki Page)

UniProt:P75712

PFAM (EcoliWiki Page)

PFAM:PF02133

RefSeq (EcoliWiki Page)

RefSeq:NP_415044


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed

Categories

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