yafO:Gene Product(s): Difference between revisions

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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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YafO  
YafO  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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predicted toxin of the YafO-YafN toxin-antitoxin system<ref name='LIB:Riley_2006'/>, B0233<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YafO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted toxin of the YafO-YafN toxin-antitoxin system<ref name='LIB:Riley_2006'/>, B0233<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YafO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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conserved protein with a possible role in spontaneous mutagenesis;  toxin of a putative toxin-antitoxin pair<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
conserved protein with a possible role in spontaneous mutagenesis;  toxin of a putative toxin-antitoxin pair<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Possible toxin, function unknown<ref name='LIB:EcoGene'/>
Possible toxin, function unknown<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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****************************************************************************************** -->{{Product_GO_help}}
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{|  id="Z46aa24eb7eb6f"  class=" tableEdit GO_table_product dataTable"   
{|  id="Z46aa24eb7eb6f"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status


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*  
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{|  id="N46aa24ebee680"  class=" tableEdit Product_interactions_table"   
{|  id="N46aa24ebee680"  class=" tableEdit Product_interactions_table dataTable"   
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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


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****************************************************************************************** -->{{Product_localization_help}}
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{|  id="E46a7b62868dad"  class=" tableEdit Product_localization_table"   
{|  id="E46a7b62868dad"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G6117-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G6117-MONOMER at EcoCyc]  
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IGKMAEAFRM RF</pre>  
IGKMAEAFRM RF</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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132
132
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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15.488 kDa
15.488 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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7.6 (calculated)
7.6 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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15,470 - 15,595 (calc based on 3 Y, 2 W, and 1 C residues)
15,470 - 15,595 (calc based on 3 Y, 2 W, and 1 C residues)
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****************************************************************************************** -->{{Product_domains_motifs_help}}
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{|  id="X46aa24ee11115"  class=" tableEdit Product_motif_table"   
{|  id="X46aa24ee11115"  class=" tableEdit Product_motif_table dataTable"   
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|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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****************************************************************************************** -->{{Product_resources_help}}
****************************************************************************************** -->{{Product_resources_help}}
{|  id="I46aa24eea4992"  class=" tableEdit Product_resource_table"   
{|  id="I46aa24eea4992"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="L46aa24eeede65"  class=" tableEdit Gene_accessions_table"   
{|  id="L46aa24eeede65"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 21:35, 23 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YafO

Synonyms

predicted toxin of the YafO-YafN toxin-antitoxin system[1], B0233[2][1], YafO[2][1]

Product description

conserved protein with a possible role in spontaneous mutagenesis; toxin of a putative toxin-antitoxin pair[2][3]

Possible toxin, function unknown[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MRVFKTKLIR LQLTAEELDA LTADFISYKR DGVLPDIFGR DALYDDSFTW PLIKFERVAH
IHLANENNPF PPQLRQFSRT NDEAHLVYCQ GAFDEQAWLL IAILKPEPHK LARDNNQMHK
IGKMAEAFRM RF
Length

132

Mol. Wt

15.488 kDa

pI

7.6 (calculated)

Extinction coefficient

15,470 - 15,595 (calc based on 3 Y, 2 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yafO taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6117-MONOMER

UniProt (EcoliWiki Page)

UniProt:Q47157

RefSeq (EcoliWiki Page)

RefSeq:NP_414768


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

Categories

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