sstT:Gene Product(s): Difference between revisions

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Table edited by Bmcintosh via TableEdit
touch the Product_motif_table table.
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|-
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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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SstT  
SstT  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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sodium:serine/threonine symporter<ref name='LIB:Riley_2006'/>, B3089<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgjU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SstT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
sodium:serine/threonine symporter<ref name='LIB:Riley_2006'/>, B3089<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgjU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SstT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
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!align=left |Product description
!align=left {{table heading style}} |Product description
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SstT transporter<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
SstT transporter<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Na+/serine (threonine) symporter<ref name='LIB:EcoGene'/>
Na+/serine (threonine) symporter<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


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!|Compartment!!Description!!Evidence!!Source!!Notes
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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=YGJU-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=YGJU-MONOMER at EcoCyc]  
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ISNDIAMQVV AVGFIIGVLQ DSCETALNSS TDVLFTAAAC QAEDDRLANS ALRN</pre>  
ISNDIAMQVV AVGFIIGVLQ DSCETALNSS TDVLFTAAAC QAEDDRLANS ALRN</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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414
414
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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43.478 kDa
43.478 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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8.6 (calculated)
8.6 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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34,950 - 35,950 (calc based on 5 Y, 5 W, and 8 C residues)
34,950 - 35,950 (calc based on 5 Y, 5 W, and 8 C residues)
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!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
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Removed
Removed
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[http://www.uniprot.org/uniprot/P0AGE4#section_features UniProt:P0AGE4]  
[http://www.uniprot.org/uniprot/P0AGE4#section_features UniProt:P0AGE4]
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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!|Name!!URL!!Comments
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Revision as of 21:24, 23 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SstT

Synonyms

sodium:serine/threonine symporter[1], B3089[2][1], YgjU[2][1], SstT[2][1]

Product description

SstT transporter[2][3]

Na+/serine (threonine) symporter[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0017153

sodium:dicarboxylate symporter activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001991

F

Seeded from EcoCyc [5]

complete

GO:0016021

integral to membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc [5]

complete

GO:0016020

membrane

GO_REF:0000002
GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001991
SP_KW:KW-0397
SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0015293

symporter activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0769

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0006865

amino acid transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0029

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0006835

dicarboxylic acid transport

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001991

P

Seeded from EcoCyc [5]

complete

GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc [5]

complete

GO:0015292

uniporter activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0005886

plasma membrane

GO_REF:0000020
GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

HAMAP:MF_01582
SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc [5]

complete

GO:0015171

amino acid transmembrane transporter activity

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01582

F

Seeded from EcoCyc [5]

complete

GO:0006564

L-serine biosynthetic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0009088

threonine biosynthetic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016021

integral to membrane

PMID:12097162[7]

IDA: Inferred from Direct Assay

C

complete

GO:0006865

amino acid transport

PMID:12097162[7]

IDA: Inferred from Direct Assay

P

complete

GO:0005295

neutral amino acid:sodium symporter activity

PMID:12097162[7]

IDA: Inferred from Direct Assay

F

complete

GO:0015175

neutral amino acid transmembrane transporter activity

PMID:12097162[7]

IDA: Inferred from Direct Assay

F

complete

GO:0032329

serine transport

PMID:12097162[7]

IDA: Inferred from Direct Assay

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

plasma membrane

C-terminus localized in the cytoplasm with 8 predicted transmembrane domains

Daley et al. (2005) [8]

plasma membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MTTQRSPGLF RRLAHGSLVK QILVGLVLGI LLAWISKPAA EAVGLLGTLF VGALKAVAPI
LVLMLVMASI ANHQHGQKTN IRPILFLYLL GTFSAALAAV VFSFAFPSTL HLSSSAGDIS
PPSGIVEVMR GLVMSMVSNP IDALLKGNYI GILVWAIGLG FALRHGNETT KNLVNDMSNA
VTFMVKLVIR FAPIGIFGLV SSTLATTGFS TLWGYAQLLV VLVGCMLLVA LVVNPLLVWW
KIRRNPFPLV LLCLRESGVY AFFTRSSAAN IPVNMALCEK LNLDRDTYSV SIPLGATINM
AGAAITITVL TLAAVNTLGI PVDLPTALLL SVVASLCACG ASGVAGGSLL LIPLACNMFG
ISNDIAMQVV AVGFIIGVLQ DSCETALNSS TDVLFTAAAC QAEDDRLANS ALRN
Length

414

Mol. Wt

43.478 kDa

pI

8.6 (calculated)

Extinction coefficient

34,950 - 35,950 (calc based on 5 Y, 5 W, and 8 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0AGE4


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<motif_map/>

tmhmm.php?gene=sstT&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=sstT taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:YGJU-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0AGE4

PFAM (EcoliWiki Page)

PFAM:PF00375

RefSeq (EcoliWiki Page)

RefSeq:NP_417560


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 6.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 7.4 Kim, YM et al. (2002) Purification, reconstitution, and characterization of Na(+)/serine symporter, SstT, of Escherichia coli. J. Biochem. 132 71-6 PubMed
  8. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed

Categories

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