metQ:Gene Product(s): Difference between revisions

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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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MetQ  
MetQ  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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DL-methionine transporter subunit<ref name='LIB:Riley_2006'/>, periplasmic-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B0197<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MetD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MetQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaeC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
DL-methionine transporter subunit<ref name='LIB:Riley_2006'/>, periplasmic-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B0197<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MetD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MetQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaeC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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MetQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
MetQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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L,D-methionine transporter, methionine-binding receptor; lipoprotein; methionine sulfoximine sensitivity<ref name='LIB:EcoGene'/>
L,D-methionine transporter, methionine-binding receptor; lipoprotein; methionine sulfoximine sensitivity<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|  id="S46aa22e219396"  class=" tableEdit GO_table_product dataTable"   
{|  id="S46aa22e219396"  class=" tableEdit GO_table_product dataTable"   
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|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
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{|  id="M46aa22e28906d"  class=" tableEdit Product_interactions_table"   
{|  id="M46aa22e28906d"  class=" tableEdit Product_interactions_table dataTable"   
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|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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****************************************************************************************** -->{{Product_localization_help}}
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{|  id="F46aa22e390e6f"  class=" tableEdit Product_localization_table"   
{|  id="F46aa22e390e6f"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=METQ-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=METQ-MONOMER at EcoCyc]  
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ENVKKFVQAY QSDEVYEAAN KVFNGGAVKG W</pre>  
ENVKKFVQAY QSDEVYEAAN KVFNGGAVKG W</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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271
271
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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29.431 kDa
29.431 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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5.0 (calculated)
5.0 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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20,400 - 20,525 (calc based on 10 Y, 1 W, and 1 C residues)
20,400 - 20,525 (calc based on 10 Y, 1 W, and 1 C residues)
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*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="U46aa22e559b87"  class=" tableEdit Product_motif_table"   
{|  id="U46aa22e559b87"  class=" tableEdit Product_motif_table dataTable"   
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|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
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[[uniprotmanual:signal|UniProt Manual:Signal Peptides]]
[[uniprotmanual:signal|UniProt Manual:Signal Peptides]]
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[http://www.uniprot.org/uniprot/P28635#section_features UniProt:P28635]  
[http://www.uniprot.org/uniprot/P28635#section_features UniProt:P28635]
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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{|  id="L46aa22e5ed111"  class=" tableEdit Product_resource_table"   
{|  id="L46aa22e5ed111"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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{|  id="I46aa22e6422c2"  class=" tableEdit Gene_accessions_table"   
{|  id="I46aa22e6422c2"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="K46a7b419b532f"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 20:26, 23 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

MetQ

Synonyms

DL-methionine transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B0197[2][1], MetD[2][1], MetQ[2][1], YaeC[2][1]

Product description

MetQ[2][3];

Component of L- and D-methionine uptake ABC permease[2][3]

L,D-methionine transporter, methionine-binding receptor; lipoprotein; methionine sulfoximine sensitivity[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005515

protein binding

PMID:16606699[5]

IPI: Inferred from Physical Interaction

UniProtKB:P0A6Y8

F

Seeded from EcoCyc [6]

complete

GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc [6]

complete

GO:0006865

amino acid transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0029

P

Seeded from EcoCyc [6]

complete

GO:0016020

membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc [6]

complete

GO:0005886

plasma membrane

GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003
SP_SL:SL-0039

C

Seeded from EcoCyc [6]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of L- and D-methionine uptake ABC permease

could be indirect

Protein

araG

PMID:15690043[7]

Experiment(s):EBI-891576

Protein

yfaY

PMID:15690043[7]

Experiment(s):EBI-891576

Protein

tufA

PMID:15690043[7]

Experiment(s):EBI-891576

Protein

kefF

PMID:15690043[7]

Experiment(s):EBI-891576

Protein

yahK

PMID:15690043[7]

Experiment(s):EBI-891576

Protein

gfcA

PMID:15690043[7]

Experiment(s):EBI-891576

Protein

dnaK

PMID:16606699[5]

Experiment(s):EBI-1135924
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

periplasm

From EcoCyc[3]

Inner membrane

PMID:12218041

EchoLocation:metQ


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MAFKFKTFAA VGALIGSLAL VGCGQDEKDP NHIKVGVIVG AEQQVAEVAQ KVAKDKYGLD
VELVTFNDYV LPNEALSKGD IDANAFQHKP YLDQQLKDRG YKLVAVGNTF VYPIAGYSKK
IKSLDELQDG SQVAVPNDPT NLGRSLLLLQ KVGLIKLKDG VGLLPTVLDV VENPKNLKIV
ELEAPQLPRS LDDAQIALAV INTTYASQIG LTPAKDGIFV EDKESPYVNL IVTREDNKDA
ENVKKFVQAY QSDEVYEAAN KVFNGGAVKG W
Length

271

Mol. Wt

29.431 kDa

pI

5.0 (calculated)

Extinction coefficient

20,400 - 20,525 (calc based on 10 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-22

UniProt Manual:Signal Peptides

UniProt:P28635


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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=metQ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:METQ-MONOMER

UniProt (EcoliWiki Page)

UniProt:P28635

PFAM (EcoliWiki Page)

PFAM:PF03180

RefSeq (EcoliWiki Page)

RefSeq:NP_414739


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed

Categories

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