matB:Gene Product(s): Difference between revisions

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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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YagZ  
YagZ  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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conserved protein<ref name='LIB:Riley_2006'/>, B0293<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YagZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MatB<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
conserved protein<ref name='LIB:Riley_2006'/>, B0293<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YagZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MatB<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Cryptic Mat fimbrillin gene, expressed in O18acK1H7 strains<ref name='LIB:EcoGene'/>
Cryptic Mat fimbrillin gene, expressed in O18acK1H7 strains<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|  id="J46aa2753b9625"  class=" tableEdit GO_table_product dataTable"   
{|  id="J46aa2753b9625"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status


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*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
****************************************************************************************** -->{{Product_interactions_help}}
{|  id="B46aa2754356a2"  class=" tableEdit Product_interactions_table"   
{|  id="B46aa2754356a2"  class=" tableEdit Product_interactions_table dataTable"   
|-
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


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****************************************************************************************** -->{{Product_localization_help}}
****************************************************************************************** -->{{Product_localization_help}}
{|  id="P46a7b883ef441"  class=" tableEdit Product_localization_table"   
{|  id="P46a7b883ef441"  class=" tableEdit Product_localization_table"   
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|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes
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|-  
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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G6164-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G6164-MONOMER at EcoCyc]  
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WSGDVSVQFD ATWTS</pre>  
WSGDVSVQFD ATWTS</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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195
195
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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20.111 kDa
20.111 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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4.5 (calculated)
4.5 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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22,460 (calc based on 4 Y, 3 W, and  C residues)
22,460 (calc based on 4 Y, 3 W, and  C residues)
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*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="H46aa275650f9f"  class=" tableEdit Product_motif_table"   
{|  id="H46aa275650f9f"  class=" tableEdit Product_motif_table dataTable"   
|-
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
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|-  
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[[uniprotmanual:signal|UniProt Manual:Signal Peptides]]
[[uniprotmanual:signal|UniProt Manual:Signal Peptides]]
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[http://www.uniprot.org/uniprot/P0AAA3#section_features UniProt:P0AAA3]  
[http://www.uniprot.org/uniprot/P0AAA3#section_features UniProt:P0AAA3]
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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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****************************************************************************************** -->{{Product_resources_help}}
****************************************************************************************** -->{{Product_resources_help}}
{|  id="J46aa2756e54f7"  class=" tableEdit Product_resource_table"   
{|  id="J46aa2756e54f7"  class=" tableEdit Product_resource_table"   
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|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="L46aa27573ab62"  class=" tableEdit Gene_accessions_table"   
{|  id="L46aa27573ab62"  class=" tableEdit Gene_accessions_table"   
|-
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="K46a7b8878b363"  class=" tableEdit Links_table"   
{|  id="K46a7b8878b363"  class=" tableEdit Links_table"   
|-
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 20:24, 23 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YagZ

Synonyms

conserved protein[1], B0293[2][1], YagZ[2][1], MatB[3][1]

Product description

conserved protein[2][3]

Cryptic Mat fimbrillin gene, expressed in O18acK1H7 strains[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

Periplasm

PMID:16522795[5]

EchoLocation:yagZ


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MKKKVLAIAL VTVFTGMGVA QAADVTAQAV ATWSATAKKD TTSKLVVTPL GSLAFQYAEG
IKGFNSQKGL FDVAIEGDST ATAFKLTSRL ITNTLTQLDT SGSTLNVGVD YNGAAVEKTG
DTVMIDTANG VLGGNLSPLA NGYNASNRTT AQDGFTFSII SGTTNGTTAV TDYSTLPEGI
WSGDVSVQFD ATWTS
Length

195

Mol. Wt

20.111 kDa

pI

4.5 (calculated)

Extinction coefficient

22,460 (calc based on 4 Y, 3 W, and C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-22

UniProt Manual:Signal Peptides

UniProt:P0AAA3


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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=matB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6164-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0AAA3

RefSeq (EcoliWiki Page)

RefSeq:NP_414827


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Marani, P et al. (2006) New Escherichia coli outer membrane proteins identified through prediction and experimental verification. Protein Sci. 15 884-9 PubMed

Categories

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