lplA:Gene Product(s): Difference between revisions

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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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LplA product  
LplA product  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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lipoate-protein ligase A product<ref name='LIB:Riley_2006'/>, B4386 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjjF product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Slr product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LplA product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Slr1 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
lipoate-protein ligase A product<ref name='LIB:Riley_2006'/>, B4386 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjjF product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Slr product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LplA product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Slr1 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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lipoyl-protein ligase A<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
lipoyl-protein ligase A<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Lipoate-protein ligase A; selenolipoate resistant<ref name='LIB:EcoGene'/>
Lipoate-protein ligase A; selenolipoate resistant<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=-6 -6]<ref name='LIB:Riley_2006'/>
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=-6 -6]<ref name='LIB:Riley_2006'/>
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{|  id="P46ab317187593"  class=" tableEdit GO_table_product dataTable"   
{|  id="P46ab317187593"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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{|  id="C46ab318399f11"  class=" tableEdit Product_interactions_table"   
{|  id="C46ab318399f11"  class=" tableEdit Product_interactions_table dataTable"   
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|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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{|  id="J46ab31846af61"  class=" tableEdit Product_localization_table"   
{|  id="J46ab31846af61"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=EG11796-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG11796-MONOMER at EcoCyc]  
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CLYRADMLQQ ECEALLVDFP EQEKELRELS AWMAGAVR</pre>  
CLYRADMLQQ ECEALLVDFP EQEKELRELS AWMAGAVR</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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338
338
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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37.925 kDa
37.925 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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6.0 (calculated)
6.0 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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47,440 - 48,190 (calc based on 6 Y, 7 W, and 6 C residues)
47,440 - 48,190 (calc based on 6 Y, 7 W, and 6 C residues)
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{|  id="W46ab3186248b2"  class=" tableEdit Product_motif_table"   
{|  id="W46ab3186248b2"  class=" tableEdit Product_motif_table dataTable"   
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!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
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Removed
Removed
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[http://www.uniprot.org/uniprot/P32099#section_features UniProt:P32099]  
[http://www.uniprot.org/uniprot/P32099#section_features UniProt:P32099]
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
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{|  id="M46ab31870124e"  class=" tableEdit Product_resource_table"   
{|  id="M46ab31870124e"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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{|  id="A46ab318769391"  class=" tableEdit Gene_accessions_table"   
{|  id="A46ab318769391"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="V46ab318a4cd02"  class=" tableEdit Links_table"   
{|  id="V46ab318a4cd02"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 20:20, 23 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

LplA product

Synonyms

lipoate-protein ligase A product[1], B4386 product[2][1], YjjF product[2][1], Slr product[2][1], LplA product[2][1], Slr1 product[2][1]

Product description

lipoyl-protein ligase A[2][3]

Lipoate-protein ligase A; selenolipoate resistant[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0018055

peptidyl-lysine lipoylation

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01602

P

Seeded from EcoCyc [5]

complete

GO:0016979

lipoate-protein ligase activity

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01602

F

Seeded from EcoCyc [5]

complete

GO:0016874

ligase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0436

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0006464

protein modification process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004143

P

Seeded from EcoCyc [5]

complete

GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0003824

catalytic activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004143

F

Seeded from EcoCyc [5]

complete

GO:0005515

protein binding

PMID:16606699[7]

IPI: Inferred from Physical Interaction

UniProtKB:P76116

F

Seeded from EcoCyc [5]

complete

GO:0000166

nucleotide binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc [5]

complete

GO:0005524

ATP binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc [5]

complete

GO:0009249

protein lipoylation

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004562

P

Seeded from EcoCyc [5]

complete

GO:0016740

transferase activity

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR004562
SP_KW:KW-0808

F

Seeded from EcoCyc [5]

complete

GO:0042158

lipoprotein biosynthetic process

P

Seeded from Riley et al 2006 [1].

required fields missing

GO:0006418

tRNA aminoacylation for protein translation

P

Seeded from Riley et al 2006 [1].

required fields missing

GO:0009059

macromolecule biosynthetic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yncE

PMID:16606699[7]

Experiment(s):EBI-1147965

Protein

entC

PMID:15690043[8]

Experiment(s):EBI-894918

Protein

ybdH

PMID:15690043[8]

Experiment(s):EBI-894918
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MSTLRLLISD SYDPWFNLAV EECIFRQMPA TQRVLFLWRN ADTVVIGRAQ NPWKECNTRR
MEEDNVRLAR RSSGGGAVFH DLGNTCFTFM AGKPEYDKTI STSIVLNALN ALGVSAEASG
RNDLVVKTVE GDRKVSGSAY RETKDRGFHH GTLLLNADLS RLANYLNPDK KKLAAKGITS
VRSRVTNLTE LLPGITHEQV CEAITEAFFA HYGERVEAEI ISPNKTPDLP NFAETFARQS
SWEWNFGQAP AFSHLLDERF TWGGVELHFD VEKGHITRAQ VFTDSLNPAP LEALAGRLQG
CLYRADMLQQ ECEALLVDFP EQEKELRELS AWMAGAVR
Length

338

Mol. Wt

37.925 kDa

pI

6.0 (calculated)

Extinction coefficient

47,440 - 48,190 (calc based on 6 Y, 7 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P32099


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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=lplA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11796-MONOMER

UniProt (EcoliWiki Page)

UniProt:P32099

PFAM (EcoliWiki Page)

PFAM:PF03099

RefSeq (EcoliWiki Page)

RefSeq:NP_418803


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ 8.0 8.1 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed

Categories

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