fabI:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Update TableEdit tables.
touch the Product_motif_table table.
Line 38: Line 38:


|-
|-
!align=left |Standard name
!align=left {{table heading style}} |Standard name
||
||
FabI  
FabI  
|-
|-
!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
||
||
enoyl-[acyl-carrier-protein] reductase, NADH-dependent<ref name='LIB:Riley_2006'/>, B1288<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Gts<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, QmeA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EnvM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FabI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
enoyl-[acyl-carrier-protein] reductase, NADH-dependent<ref name='LIB:Riley_2006'/>, B1288<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Gts<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, QmeA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EnvM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FabI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
|-
!align=left |Product description
!align=left {{table heading style}} |Product description
||
||
ENOYL-ACP-REDUCT-NADH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
ENOYL-ACP-REDUCT-NADH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Line 52: Line 52:
Enoyl-ACP reductase, NADH dependent<ref name='LIB:EcoGene'/>
Enoyl-ACP reductase, NADH dependent<ref name='LIB:EcoGene'/>
|-
|-
!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
||
||
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.1.9 1.3.1.9]<ref name='LIB:Riley_2006'/>
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.1.9 1.3.1.9]<ref name='LIB:Riley_2006'/>
Line 76: Line 76:
****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|  id="O46aa61d8c0fe1"  class=" tableEdit GO_table_product dataTable"   
{|  id="O46aa61d8c0fe1"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-  
|-  
Line 396: Line 396:
*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
****************************************************************************************** -->{{Product_interactions_help}}
{|  id="G46aa61e1d3c21"  class=" tableEdit Product_interactions_table"   
{|  id="G46aa61e1d3c21"  class=" tableEdit Product_interactions_table dataTable"   
|-
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-  
|-  
Line 506: Line 506:
****************************************************************************************** -->{{Product_localization_help}}
****************************************************************************************** -->{{Product_localization_help}}
{|  id="I46a7f4be28cd7"  class=" tableEdit Product_localization_table"   
{|  id="I46a7f4be28cd7"  class=" tableEdit Product_localization_table"   
|-
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


Line 533: Line 533:


|-
|-
!align=left |Sequence
!align=left {{table heading style}} |Sequence
||
||
[http://biocyc.org/ECOLI/sequence-aa?object=ENOYL-ACP-REDUCT-NADH-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=ENOYL-ACP-REDUCT-NADH-MONOMER at EcoCyc]  
Line 542: Line 542:
SGEVVHVDGG FSIAAMNELE LK</pre>  
SGEVVHVDGG FSIAAMNELE LK</pre>  
|-
|-
!align=left |Length
!align=left {{table heading style}} |Length
||
||
262
262
|-
|-
!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
||
||
27.864 kDa
27.864 kDa
|-
|-
!align=left |pI
!align=left {{table heading style}} |pI
||
||
5.7 (calculated)
5.7 (calculated)
|-
|-
!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
||
||
15,930 - 16,430 (calc based on 7 Y, 1 W, and 4 C residues)
15,930 - 16,430 (calc based on 7 Y, 1 W, and 4 C residues)
Line 573: Line 573:
*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="L46aa61e40f64f"  class=" tableEdit Product_motif_table"   
{|  id="L46aa61e40f64f"  class=" tableEdit Product_motif_table dataTable"   
|-
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
|-  
|-  
|
|
Line 584: Line 584:
Removed
Removed
|
|
[http://www.uniprot.org/uniprot/P0AEK4#section_features UniProt:P0AEK4]  
[http://www.uniprot.org/uniprot/P0AEK4#section_features UniProt:P0AEK4]
|


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.22550.L46aa61e40f64f&page=22550&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.22550.L46aa61e40f64f&page=22550&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.22550.L46aa61e40f64f--></td>
<!--box uid=421aa90e079fa326b6494f812ad13e79.22550.L46aa61e40f64f--></td>
Line 610: Line 612:


|-
|-
!align=left |Structures
!align=left {{table heading style}} |Structures
||
||
<beststructure>
<beststructure>
Line 617: Line 619:
</beststructure>
</beststructure>
|-
|-
!align=left |Models
!align=left {{table heading style}} |Models
||
||
View models at:
View models at:
Line 666: Line 668:
****************************************************************************************** -->{{Product_resources_help}}
****************************************************************************************** -->{{Product_resources_help}}
{|  id="S46aa61e926c4e"  class=" tableEdit Product_resource_table"   
{|  id="S46aa61e926c4e"  class=" tableEdit Product_resource_table"   
|-
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


Line 688: Line 690:
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="Z46aa61e975468"  class=" tableEdit Gene_accessions_table"   
{|  id="Z46aa61e975468"  class=" tableEdit Gene_accessions_table"   
|-
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
Line 745: Line 747:
****************************************************************************************** -->
****************************************************************************************** -->
{|  id="V46a7f4c8e2cea"  class=" tableEdit Links_table"   
{|  id="V46a7f4c8e2cea"  class=" tableEdit Links_table"   
|-
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 19:49, 23 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

FabI

Synonyms

enoyl-[acyl-carrier-protein] reductase, NADH-dependent[1], B1288[2][1], Gts[2][1], QmeA[2][1], EnvM[2][1], FabI[2][1]

Product description

ENOYL-ACP-REDUCT-NADH[2][3]

Enoyl-ACP reductase, NADH dependent[4]

EC number (for enzymes)
edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0046677

response to antibiotic

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0046

P

Seeded from EcoCyc [5]

complete

GO:0016491

oxidoreductase activity

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR002198
InterPro:IPR002347
SP_KW:KW-0560

F

Seeded from EcoCyc [5]

complete

GO:0016020

membrane

GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0397
SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0008610

lipid biosynthetic process

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0444

P

Seeded from EcoCyc [5]

complete

GO:0008152

metabolic process

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002198
InterPro:IPR002347

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0006633

fatty acid biosynthetic process

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0275

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0004318

enoyl-(acyl-carrier-protein) reductase (NADH) activity

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.3.1.9

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0005515

protein binding

PMID:15690043[7]

IPI: Inferred from Physical Interaction

UniProtKB:P0AF90

F

Seeded from EcoCyc [5]

complete

GO:0005624

membrane fraction

PMID:16858726[8]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [5]

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0003824

catalytic activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

F

Seeded from EcoCyc [5]

complete

GO:0005488

binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

F

Seeded from EcoCyc [5]

complete

GO:0005739

mitochondrion

PMID:16858726[8]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [5]

complete

GO:0005886

plasma membrane

GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc [5]

complete

GO:0055114

oxidation reduction

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc [5]

complete

GO:0006654

phosphatidic acid biosynthetic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yfgI

PMID:15690043[7]

Experiment(s):EBI-887392

Protein

dnaN

PMID:15690043[7]

Experiment(s):EBI-887392

Protein

rho

PMID:15690043[7]

Experiment(s):EBI-887392

Protein

rplJ

PMID:15690043[7]

Experiment(s):EBI-887392

Protein

rpsA

PMID:15690043[7]

Experiment(s):EBI-887392

Protein

rpsJ

PMID:15690043[7]

Experiment(s):EBI-887392

Protein

ycbY

PMID:15690043[7]

Experiment(s):EBI-887392

Protein

yjgD

PMID:15690043[7]

Experiment(s):EBI-893265
edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MGFLSGKRIL VTGVASKLSI AYGIAQAMHR EGAELAFTYQ NDKLKGRVEE FAAQLGSDIV
LQCDVAEDAS IDTMFAELGK VWPKFDGFVH SIGFAPGDQL DGDYVNAVTR EGFKIAHDIS
SYSFVAMAKA CRSMLNPGSA LLTLSYLGAE RAIPNYNVMG LAKASLEANV RYMANAMGPE
GVRVNAISAG PIRTLAASGI KDFRKMLAHC EAVTPIRRTV TIEDVGNSAA FLCSDLSAGI
SGEVVHVDGG FSIAAMNELE LK
Length

262

Mol. Wt

27.864 kDa

pI

5.7 (calculated)

Extinction coefficient

15,930 - 16,430 (calc based on 7 Y, 1 W, and 4 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0AEK4


edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fabI taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:ENOYL-ACP-REDUCT-NADH-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0AEK4

UniProt (EcoliWiki Page)

UniProt:P0AEK4

PFAM (EcoliWiki Page)

PFAM:PF00106

RefSeq (EcoliWiki Page)

RefSeq:NP_415804


edit table


Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 6.2 6.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  8. ↑ 8.0 8.1 Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=fabI:Gene_Product(s)&oldid=1049237"