dfp:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''dfp''  
''dfp''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3629, b3639, JW5642, dnaS, coaBC''<ref name='LIB:Riley_2006'/>
''ECK3629, b3639, JW5642, dnaS, coaBC''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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EG10004<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
EG10004<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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fused 4'-phosphopantothenoylcysteine decarboxylase<ref name='LIB:Riley_2006'/>, phosphopantothenoylcysteine synthetase, FMN-binding<ref name='LIB:Riley_2006'/>, B3639<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Dfp<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
fused 4'-phosphopantothenoylcysteine decarboxylase<ref name='LIB:Riley_2006'/>, phosphopantothenoylcysteine synthetase, FMN-binding<ref name='LIB:Riley_2006'/>, B3639<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Dfp<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0004632 phosphopantothenate--cysteine ligase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0004633 phosphopantothenoylcysteine decarboxylase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0010181 FMN binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0015937 coenzyme A biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s):   
transcription unit(s):   
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=dfp&loc=MG1655:3810754..3811974,W3110:3827684..3826464,REL606:3751086..3752306,DH10B:3908331..3909551 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3908331&end=3909551&gene=dfp&aa=mkarqqkycdkianfwchptgkiimslagkkivlgvsggiaayktpelvrrlrdrgadvrvamteaakafitplslqavsgypvsdslldpaaeaamghielgkwadlvilapatadliarvaagmandlvsticlatpapvavlpamnqqmyraaatqhnlevlasrglliwgpdsgsqacgdigpgrmldpltivdmavahfspvndlkhlnimitagptrepldpvryisnhssgkmgfaiaaaaarrganvtlvsgpvslptppfvkrvdvmtalemeaavnasvqqqnifigcaavadyraatvapekikkqatqgdeltikmvknpdivagvaalkdhrpyvvgfaaetnnveeyarqkrirknldlicandvsqptqgfnsdnnalhlfwqdgdkvlplerkellgqllldeivtrydeknrr Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dfp+AND+escherichia+coli Pubmed(dfp)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=dfp Textpresso(dfp)]


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Revision as of 00:04, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

dfp

Gene Synonym(s)

ECK3629, b3639, JW5642, dnaS, coaBC[1]

Product Desc.

EG10004[2][3]

Coenzyme A biosynthesis, bifunctional enzyme; phosphopantothenoylcysteine decarboxylase (N) and phosphopantothenoylcysteine synthase (C)[4]

Product Synonyms(s)

fused 4'-phosphopantothenoylcysteine decarboxylase[1], phosphopantothenoylcysteine synthetase, FMN-binding[1], B3639[2][1], DnaS[2][1], Dfp[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s):

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(dfp)    Textpresso(dfp)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Dfp was originally identified as a flavoprotein affecting DNA synthesis and pantothenate metabolism. The N-terminal domain catalyzes the decarboxylation of (R)-4'-phospho-N-pantothenoylcysteine to 4'-phosphopantetheine.[4]


References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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