rcsB:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rcsB''  
''rcsB''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2210, b2217, JW2205''<ref name='LIB:Riley_2006'/>
''ECK2210, b2217, JW2205''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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RcsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
RcsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Positive regulatory gene for capsule (colanic acid) synthesis; when overexpressed, restores ftsZ84 growth on low-salt medium<ref name='LIB:EcoGene'/>
Positive regulatory gene for capsule (colanic acid) synthesis; when overexpressed, restores ftsZ84 growth on low-salt medium<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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DNA-binding response regulator in two-component regulatory system with RcsC and YojN<ref name='LIB:Riley_2006'/>, B2217<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RcsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, positive response regulator for colanic capsule biosynthesis, (sensor, RcsC)<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, regulator protein RcsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, unphosphorylated regulator protein RcsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, unmodified regulator protein RcsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
DNA-binding response regulator in two-component regulatory system with RcsC and YojN<ref name='LIB:Riley_2006'/>, B2217<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RcsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, positive response regulator for colanic capsule biosynthesis, (sensor, RcsC)<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, regulator protein RcsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, unphosphorylated regulator protein RcsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, unmodified regulator protein RcsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0016563 transcription activator activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP,IGI])
* GO:0016564 transcription repressor activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP,IGI])
'''Biological Process'''
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP,IGI])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rcsB|rcsB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:rcsDB|rcsDB]]<ref name='LIB:EcoCyc11.1'/>  
transcription unit(s): [[:Category:Txn_unit:rcsB|rcsB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:rcsDB|rcsDB]]<ref name='LIB:EcoCyc11.1'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=rcsB&loc=MG1655:2314199..2314849,W3110:2319511..2320161,DH10B:2405187..2405837 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2405187&end=2405837&gene=rcsB&aa=mnnmnviiaddhpivlfgirksleqiewvnvvgefedstalinnlpkldahvlitdlsmpgdkygdgitlikyikrhfpslsiivltmnnnpailsavldldiegivlkqgaptdlpkalaalqkgkkftpesvsrllekisaggygdkrlspkesevlrlfaegflvteiakklnrsiktissqkksammklgvendiallnylssvtlspadkd Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rcsB+AND+escherichia+coli Pubmed(rcsB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rcsB Textpresso(rcsB)]


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Revision as of 23:13, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rcsB

Gene Synonym(s)

ECK2210, b2217, JW2205[1]

Product Desc.

RcsB[2][3];

Component of RcsB[2][3]

Positive regulatory gene for capsule (colanic acid) synthesis; when overexpressed, restores ftsZ84 growth on low-salt medium[4]

Product Synonyms(s)

DNA-binding response regulator in two-component regulatory system with RcsC and YojN[1], B2217[2][1], RcsB[2][1], positive response regulator for colanic capsule biosynthesis, (sensor, RcsC)[2][1], regulator protein RcsB[2][1], unphosphorylated regulator protein RcsB[2][1], unmodified regulator protein RcsB[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rcsB[2], rcsDB[3]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(rcsB)    Textpresso(rcsB)

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Notes

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Binds TrxA (Kumar, 2004). HT_Cmplx42_Mem: RcsB+YfgM.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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