tig:Gene Product(s): Difference between revisions

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|-
|-
!align=left {{table heading style}} |Standard name
!align=left |Standard name
||
||
Tig  
Tig  
|-
|-
!align=left {{table heading style}} |Synonyms
!align=left |Synonyms
||
||
peptidyl-prolyl cis/trans isomerase (trigger factor)<ref name='LIB:Riley_2006'/>, B0436<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tig<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
peptidyl-prolyl cis/trans isomerase (trigger factor)<ref name='LIB:Riley_2006'/>, B0436<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tig<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
|-
!align=left {{table heading style}} |Product description
!align=left |Product description
||
||
trigger factor; a molecular chaperone involved in cell division<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
trigger factor; a molecular chaperone involved in cell division<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Trigger factor, protein folding chaperone; also peptidyl-prolyl cis-trans isomerase; interacts with nascent polypeptide chains<ref name='LIB:EcoGene'/>
Trigger factor, protein folding chaperone; also peptidyl-prolyl cis-trans isomerase; interacts with nascent polypeptide chains<ref name='LIB:EcoGene'/>
|-
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!align=left {{table heading style}} |EC number (for enzymes)
!align=left |EC number (for enzymes)
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||




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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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required field missing  
required field missing  


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!|Partner Type!!Partner!!Notes!!References!!Evidence
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Experiment(s):EBI-1136591<br />  
Experiment(s):EBI-1136591<br />  


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!|Compartment!!Description!!Evidence!!Source!!Notes
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|-
|-
!align=left {{table heading style}} |Sequence
!align=left |Sequence
||
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG11003-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG11003-MONOMER at EcoCyc]  
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ETTFNELMNQ QA</pre>  
ETTFNELMNQ QA</pre>  
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!align=left {{table heading style}} |Length
!align=left |Length
||
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432
432
|-
|-
!align=left {{table heading style}} |Mol. Wt
!align=left |Mol. Wt
||
||
48.192 kDa
48.192 kDa
|-
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!align=left {{table heading style}} |pI
!align=left |pI
||
||
4.7 (calculated)
4.7 (calculated)
|-
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!align=left {{table heading style}} |Extinction coefficient
!align=left |Extinction coefficient
||
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17,420 (calc based on 8 Y, 1 W, and  C residues)
17,420 (calc based on 8 Y, 1 W, and  C residues)


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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left {{table heading style}} |Models
!align=left |Models
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View models at:
View models at:
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* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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Revision as of 00:56, 10 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Tig

Synonyms

peptidyl-prolyl cis/trans isomerase (trigger factor)[1], B0436[2][1], Tig[2][1]

Product description

trigger factor; a molecular chaperone involved in cell division[2][3]

Trigger factor, protein folding chaperone; also peptidyl-prolyl cis-trans isomerase; interacts with nascent polypeptide chains[4]

EC number (for enzymes)


edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0051301

cell division

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0132

P

Seeded from EcoCyc [5]

complete

GO:0016853

isomerase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0413

F

Seeded from EcoCyc [5]

complete

GO:0015031

protein transport

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR005215
InterPro:IPR008880
InterPro:IPR008881
HAMAP:MF_00303

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0007049

cell cycle

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0131

P

Seeded from EcoCyc [5]

complete

GO:0006457

protein folding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR001179
InterPro:IPR008880
InterPro:IPR008881
SP_KW:KW-0697
HAMAP:MF_00303

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

SP_KW:KW-0697
HAMAP:MF_00303

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0005515

protein binding

PMID:16606699[7]

IPI: Inferred from Physical Interaction

UniProtKB:P04983

F

Seeded from EcoCyc [5]

complete

GO:0005624

membrane fraction

PMID:16858726[8]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [5]

complete

GO:0005739

mitochondrion

PMID:16858726[8]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [5]

complete

GO:0005829

cytosol

PMID:16858726[8]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [5]

complete

GO:0000910

cytokinesis

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

I need a term for prolyl isomerase

required field missing

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aspA

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

yneI

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

yniB

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

lysA

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

rplC

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

rplD

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

rplW

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

rpmB

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

rpmC

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

rpsA

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

rpsB

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

rpsE

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

rpsG

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

tdcA

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

yfiP

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

ade

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

gltJ

PMID:15690043[9]

Experiment(s):EBI-895036

Protein

rpoC

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

ompA

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

rplF

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

sdhB

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

ycgL

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

narZ

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

hflB

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

putA

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

rpsC

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

fadB

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

gapA

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

adk

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

pflB

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

rpsI

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

rhsD

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

ppsA

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

rpoB

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

slyD

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

ompF

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

rpsE

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

rpsU

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

rspA

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

narY

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

yfaS

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

sdhA

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

htpG

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

lacZ

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

rplN

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

aceE

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

nadE

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

fliT

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

rpsD

PMID:16606699[7]

Experiment(s):EBI-1136591

Protein

rhsC

PMID:16606699[7]

Experiment(s):EBI-1136591
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Notes

Localization

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Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MQVSVETTQG LGRRVTITIA ADSIETAVKS ELVNVAKKVR IDGFRKGKVP MNIVAQRYGA
SVRQDVLGDL MSRNFIDAII KEKINPAGAP TYVPGEYKLG EDFTYSVEFE VYPEVELQGL
EAIEVEKPIV EVTDADVDGM LDTLRKQQAT WKEKDGAVEA EDRVTIDFTG SVDGEEFEGG
KASDFVLAMG QGRMIPGFED GIKGHKAGEE FTIDVTFPEE YHAENLKGKA AKFAINLKKV
EERELPELTA EFIKRFGVED GSVEGLRAEV RKNMERELKS AIRNRVKSQA IEGLVKANDI
DVPAALIDSE IDVLRRQAAQ RFGGNEKQAL ELPRELFEEQ AKRRVVVGLL LGEVIRTNEL
KADEERVKGL IEEMASAYED PKEVIEFYSK NKELMDNMRN VALEEQAVEA VLAKAKVTEK
ETTFNELMNQ QA
Length

432

Mol. Wt

48.192 kDa

pI

4.7 (calculated)

Extinction coefficient

17,420 (calc based on 8 Y, 1 W, and C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes
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<motif_map/>

Structure
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Structures

<beststructure> gene=tig taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11003-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A850

PFAM (EcoliWiki Page)

PFAM:PF05697

RefSeq (EcoliWiki Page)

RefSeq:NP_414970


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 6.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 7.21 7.22 7.23 7.24 7.25 7.26 7.27 7.28 7.29 7.30 7.31 7.32 7.33 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ 8.0 8.1 8.2 Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
  9. ↑ 9.00 9.01 9.02 9.03 9.04 9.05 9.06 9.07 9.08 9.09 9.10 9.11 9.12 9.13 9.14 9.15 9.16 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed

Categories

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