matC:Gene: Difference between revisions

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Automated update of mnemonics from EcoGene.
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!align=left |Standard name
!align=left {{table_heading_style}} |Standard name
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''matC''  
''matC''
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!align=left |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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Meningitis-Associated
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!align=left |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''yagY, ECK0291, b0292, JW0286''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''yagY, ECK0291, b0292, JW0286''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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!|Feature type!!Location!!Description
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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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!|Database!!Accession!!Notes
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Revision as of 21:25, 25 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

matC

Mnemonic

Meningitis-Associated

Synonyms

yagY, ECK0291, b0292, JW0286[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

6.65 minutes 

MG1655: 309250..308582
gbrowse_img.php?coord=308582..309250&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 279540..280208
gbrowse_img.php?coord=279540..280208&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 309250..308582
gbrowse_img.php?coord=308582..309250&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 284800..284132
gbrowse_img.php?coord=284132..284800&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

yagY::Tn5KAN

PMID:12519969[3]

ASAP

At position 426 in Minus orientation, does not contain plasmid pKD46.
ASAP strain name: FB20130

yagY::Tn5KAN

PMID:12519969[3]

ASAP

At position 426 in Minus orientation, contains plasmid pKD46.
ASAP strain name: FB20131

ΔmatC736::kan

PMID:16738554[4]

CGSC:106236


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[5]

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6163

EchoBASE (EcoliWiki Page)

EchoBASE:EB3334

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0292

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C0403

EcoGene (EcoliWiki Page)

EcoGene:EG13564

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YAGY


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
  4. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

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