kilR:Gene: Difference between revisions

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Automated update of mnemonics from EcoGene.
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!align=left |Standard name
!align=left {{table_heading_style}} |Standard name
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''kilR''  
''kilR''
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!align=left |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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Killing function
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!align=left |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''kil, ECK1350, b1352, JW1347, ydaD''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''kil, ECK1350, b1352, JW1347, ydaD''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
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{|  id="V46a9c5552df49"  class=" tableEdit Gene_location_table"   
{|  id="V46a9c5552df49"  class=" tableEdit Gene_location_table"   
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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{|  id="K46a9c555d0a21"  class=" tableEdit Gene_sequence_features_table"   
{|  id="K46a9c555d0a21"  class=" tableEdit Gene_sequence_features_table"   
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!|Feature type!!Location!!Description
!|Feature type!!Location!!Description


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{|   id="O46a9c5561e824"  class=" tableEdit Gene_allele_table"   
{| {{Prettytable}}  id="O46a9c5561e824"  class=" tableEdit Gene_allele_table dataTable"   
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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments


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!|Resource!!Resource Type!!Source!!Notes/Reference
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{|  id="R46a9c5575ab59"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
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!|Name!!URL!!Comments
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Revision as of 21:22, 25 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

kilR

Mnemonic

Killing function

Synonyms

kil, ECK1350, b1352, JW1347, ydaD[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

30.52 minutes 

MG1655: 1416253..1416032
gbrowse_img.php?coord=1416032..1416253&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 1415178..1415399
gbrowse_img.php?coord=1415178..1415399&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 1419943..1419722
gbrowse_img.php?coord=1419722..1419943&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 1505649..1505428
gbrowse_img.php?coord=1505428..1505649&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[3]

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12155

EchoBASE (EcoliWiki Page)

EchoBASE:EB2075

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1352

EcoGene (EcoliWiki Page)

EcoGene:EG12155

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YDAD

ASAP (EcoliWikiPage)

ASAP:ABE-0004537


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

Categories

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