hrpA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''hrpA''  
''hrpA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1406, b1413, JW5905, moc''<ref name='LIB:Riley_2006'/>
''ECK1406, b1413, JW5905, moc''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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predicted ATP-dependent helicase, involved in mRNA processing<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted ATP-dependent helicase, involved in mRNA processing<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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RNA helicase-like; similarity to eukaryotic DEAH family<ref name='LIB:EcoGene'/>
RNA helicase-like; similarity to eukaryotic DEAH family<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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ATP-dependent helicase<ref name='LIB:Riley_2006'/>, B1413<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HrpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
ATP-dependent helicase<ref name='LIB:Riley_2006'/>, B1413<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HrpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0006397 mRNA processing ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0004004 ATP-dependent RNA helicase activity ([http://www.geneontology.org/GO.evidence.shtml ISS])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:hrpA|hrpA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:hrpA|hrpA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=hrpA&loc=MG1655:1481142..1484987,W3110:1484832..1488677,DH10B:1571680..1575582,REL606:1452449..1456294 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1452449&end=1456294&gene=hrpA&aa=mlrdrlrfsrrlhgvkkvknpdaqqaifqemakeidqaagkvllreaarpeitypdnlpvsqkkqdileairdhqvvivagetgsgkttqlpkicmelgrgikglightqprrlaartvanriaeelktepggcigykvrfsdhvsdntmvklmtdgillaeiqqdrllmqydtiiideaherslnidfllgylkellprrpdlkiiitsatidperfsrhfnnapiievsgrtypvevryrpiveeaddterdqlqaifdavdelsqeshgdilifmsgereirdtadalnklnlrhteilplyarlsnseqnrvfqshsgrrivlatnvaetsltvpgikyvidpgtarisrysyrtkvqrlpiepisqasanqrkgrcgrvsegicirlyseddflsrpeftdpeilrtnlasvilqmtalglgdiaafpfveapdkrniqdgvrlleelgaittdeqasaykltplgrqlsqlpvdprlarmvleaqkhgcvreamiitsalsiqdprerpmdkqqasdekhrrfhdkesdflafvnlwnylgeqqkalssnafrrlcrtdylnylrvrewqdiytqlrqvvkelgipvnsepaeyreihialltgllshigmkdadkqeytgarnarfsifpgsglfkkppkwvmvaelvetsrlwgriaaridpewvepvaqhlikrtysephweraqgavmatekvtvyglpivaarkvnysqidpalcrelfirhalvegdwqtrhaffrenlklraeveelehksrrrdilvddetlfefydqrishdvisarhfdswwkkvsretpdllnfeksmlikegaekiskldypnfwhqgnlklrlsyqfepgadadgvtvhiplpllnqveesgfewqipglrrelvialikslpkpvrrnfvpapnyaeaflgrvkplelplldslerelrrmtgvtvdredwhwdqvpdhlkitfrvvddknkklkegrslqdlkdalkgkvqetlsavaddgieqsglhiwsfgqlpesyeqkrgnykvkawpalvderdsvaiklfdnpleqkqamwnglrrllllnipspikylheklpnkaklglyfnpygkvleliddciscgvdklidanggpvwteegfaalhekvraelndtvvdiakqveqiltavfninkrlkgrvdmtmalglsdikaqmgglvyrgfvtgngfkrlgdtlrylqaiekrleklavdphrdraqmlkvenvqqawqqwinklpparrededvkeirwmieelrvsyfaqqlgtpypisdkrilqameqisg Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hrpA+AND+escherichia+coli Pubmed(hrpA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=hrpA Textpresso(hrpA)]


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Revision as of 23:51, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

hrpA

Gene Synonym(s)

ECK1406, b1413, JW5905, moc[1]

Product Desc.

predicted ATP-dependent helicase, involved in mRNA processing[2][3]

RNA helicase-like; similarity to eukaryotic DEAH family[4]

Product Synonyms(s)

ATP-dependent helicase[1], B1413[2][1], HrpA[2][1]

Function from GO

Biological Process

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hrpA[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(hrpA)    Textpresso(hrpA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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