dxs:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''dxs''  
''dxs''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0414, b0420, JW0410, yajP''<ref name='LIB:Riley_2006'/>
''ECK0414, b0420, JW0410, yajP''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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Dxs<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
Dxs<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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DXP synthase; DXP is precursor to isoprenoids, thiamin, pyridoxol<ref name='LIB:EcoGene'/>
DXP synthase; DXP is precursor to isoprenoids, thiamin, pyridoxol<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring<ref name='LIB:Riley_2006'/>, B0420<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YajP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Dxs<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring<ref name='LIB:Riley_2006'/>, B0420<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YajP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Dxs<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0006744 ubiquinone biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008615 pyridoxine biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0009228 thiamin biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:xseB-ispA-dxs-yajO|xseB-ispA-dxs-yajO]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:xseB-ispA-dxs-yajO|xseB-ispA-dxs-yajO]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=dxs&loc=MG1655:439401..437539,W3110:439401..437539,DH10B:378732..376870,REL606:408599..406737 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=408599&end=406737&gene=dxs&aa=msfdiakyptlalvdstqelrllpkeslpklcdelrrylldsvsrssghfasglgtveltvalhyvyntpfdqliwdvghqayphkiltgrrdkigtirqkgglhpfpwrgeseydvlsvghsstsisagigiavaaekegknrrtvcvigdgaitagmafeamnhagdirpdmlvilndnemsisenvgalnnhlaqllsgklysslreggkkvfsgvppikellkrteehikgmvvpgtlfeelgfnyigpvdghdvlglittlknmrdlkgpqflhimtkkgrgyepaekdpitfhavpkfdpssgclpkssgglpsyskifgdwlcetaakdnklmaitpamregsgmvefsrkfpdryfdvaiaeqhavtfaaglaiggykpivaiystflqraydqvlhdvaiqklpvlfaidragivgadgqthqgafdlsylrcipemvimtpsdenecrqmlytgyhyndgpsavryprgnavgveltpleklpigkgivkrrgeklailnfgtlmpeaakvaeslnatlvdmrfvkpldealilemaashealvtveenaimggagsgvnevlmahrkpvpvlniglpdffipqgtqeemraelgldaagmeakikawla Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dxs+AND+escherichia+coli Pubmed(dxs)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=dxs Textpresso(dxs)]


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Revision as of 00:02, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

dxs

Gene Synonym(s)

ECK0414, b0420, JW0410, yajP[1]

Product Desc.

Dxs[2][3];

Component of 1-deoxyxylulose-5-phosphate synthase[3]

DXP synthase; DXP is precursor to isoprenoids, thiamin, pyridoxol[4]

Product Synonyms(s)

1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring[1], B0420[2][1], YajP[2][1], Dxs[2][1]

Function from GO

Biological Process

Molecular Function

  • GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity (IDA)
Knock-Out Phenotype
Regulation/Expression

transcription unit(s): xseB-ispA-dxs-yajO[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(dxs)    Textpresso(dxs)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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