dnaX:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''dnaX''  
''dnaX''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0464, b0470, JW0459, dnaZ''<ref name='LIB:Riley_2006'/>
''ECK0464, b0470, JW0459, dnaZ''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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* DNA polymerase III, γ subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
* DNA polymerase III, γ subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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DNA polymerase III holoenzyme, tau and gamma ATPase subunits; gamma chain (aa 1-431) is main subunit of the clamp loader complex<ref name='LIB:EcoGene'/>
DNA polymerase III holoenzyme, tau and gamma ATPase subunits; gamma chain (aa 1-431) is main subunit of the clamp loader complex<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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DNA polymerase III/DNA elongation factor III, tau and gamma subunits<ref name='LIB:Riley_2006'/>, DnaZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0470<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
DNA polymerase III/DNA elongation factor III, tau and gamma subunits<ref name='LIB:Riley_2006'/>, DnaZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0470<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0017111 nucleoside-triphosphatase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016887 ATPase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0030337 DNA polymerase processivity factor activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006261 DNA-dependent DNA replication ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0006260 DNA replication ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Cellular Component'''
* GO:0043846 DNA polymerase III, DnaX complex ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:dnaX|dnaX]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:dnaX|dnaX]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=dnaX&loc=MG1655:491316..493247,W3110:491316..493247,DH10B:430647..432578,REL606:464159..466090 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=464159&end=466090&gene=dnaX&aa=msyqvlarkwrpqtfadvvgqehvltalanglslgrihhaylfsgtrgvgktsiarllakglncetgitatpcgvcdncreieqgrfvdlieidaasrtkvedtrdlldnvqyapargrfkvylidevhmlsrhsfnallktleeppehvkfllattdpqklpvtilsrclqfhlkaldveqirhqlehilneehiahepralqllaraaegslrdalsltdqaiasgdgqvstqavsamlgtldddqalslveamveangervmalineaaargieweallvemlgllhriamvqlspaalgndmaaielrmrelartipptdiqlyyqtlligrkelpyapdrrmgvemtllralafhprmplpepevprqsfapvaptavmtptqvppqpqsapqqaptvplpettsqvlaarqqlqrvqgatkakksepaaatrarpvnnaalerlasvtdrvqarpvpsalekapakkeayrwkattpvmqqkevvatpkalkkalehektpelaaklaaeaierdpwaaqvsqlslpklveqvalnawkeesdnavclhlrssqrhlnnrgaqqklaealsmlkgstveltiveddnpavrtplewrqaiyeeklaqaresiiadnniqtlrrffdaeldeesirpi Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dnaX+AND+escherichia+coli Pubmed(dnaX)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=dnaX Textpresso(dnaX)]


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Revision as of 00:03, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

dnaX

Gene Synonym(s)

ECK0464, b0470, JW0459, dnaZ[1]

Product Desc.


DNA polymerase III holoenzyme, tau and gamma ATPase subunits; gamma chain (aa 1-431) is main subunit of the clamp loader complex[4]

Product Synonyms(s)

DNA polymerase III/DNA elongation factor III, tau and gamma subunits[1], DnaZ[2][1], B0470[2][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): dnaX[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(dnaX)    Textpresso(dnaX)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


The tau chain is the full length protein. The gamma chain is formed by programmed ribosomal frameshifting at codon 431 to a premature stop codon.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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