cyoA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''cyoA''  
''cyoA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0426, b0432, JW0422''<ref name='LIB:Riley_2006'/>
''ECK0426, b0432, JW0422''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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cytochrome <i>bo</i> terminal oxidase subunit II<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
cytochrome <i>bo</i> terminal oxidase subunit II<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Cytochrome o oxidase subunit II, lipoprotein; also called cytochrome bo(3) ubiquinol oxidase subunit II<ref name='LIB:EcoGene'/>
Cytochrome o oxidase subunit II, lipoprotein; also called cytochrome bo(3) ubiquinol oxidase subunit II<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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cytochrome o ubiquinol oxidase subunit II<ref name='LIB:Riley_2006'/>, B0432<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CyoA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
cytochrome o ubiquinol oxidase subunit II<ref name='LIB:Riley_2006'/>, B0432<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CyoA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005488 binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0009055 electron carrier activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0009486 cytochrome bo3 ubiquinol oxidase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0015078 hydrogen ion transmembrane transporter activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0015453 oxidoreduction-driven active transmembrane transporter activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0009060 aerobic respiration ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Cellular Component'''
* GO:0005887 integral to plasma membrane ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:cyoABCDE|cyoABCDE]]<ref name='LIB:EcoCyc10.6'/>, OP00141  
transcription unit(s): [[:Category:Txn_unit:cyoABCDE|cyoABCDE]]<ref name='LIB:EcoCyc10.6'/>, OP00141  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=cyoA&loc=MG1655:450834..449887,W3110:450834..449887,DH10B:390165..389218,REL606:422313..421366 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=422313&end=421366&gene=cyoA&aa=mrlrkynkslgwlslfagtvllsgcnsalldpkgqigleqrsliltafglmlivvipailmavgfawkyrasnkdakyspnwshsnkveavvwtvpiliiiflavltwktthalepskplahdekpitievvsmdwkwffiypeqgiatvneiafpantpvyfkvtsnsvmnsffiprlgsqiyamagmqtrlhlianepgtydgisasysgpgfsgmkfkaiatpdraafdqwvakakqspntmsdmaafeklaapseynqveyfsnvkpdlfadvinkfmahgksmdmtqpegehsahegmegmdmshaesah Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cyoA+AND+escherichia+coli Pubmed(cyoA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=cyoA Textpresso(cyoA)]


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Revision as of 00:05, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

cyoA

Gene Synonym(s)

ECK0426, b0432, JW0422[1]

Product Desc.

cytochrome bo terminal oxidase subunit II[2][3];

Component of cytochrome bo terminal oxidase[2][3]

Cytochrome o oxidase subunit II, lipoprotein; also called cytochrome bo(3) ubiquinol oxidase subunit II[4]

Product Synonyms(s)

cytochrome o ubiquinol oxidase subunit II[1], B0432[2][1], CyoA[2][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): cyoABCDE[2], OP00141

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(cyoA)    Textpresso(cyoA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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2 IM TMS; cleavable signal peptide can be incorrectly predicted as a third TMS. First 24 aa are a type II signal peptide. First 25 aa and the last 200 aa of the mature protein are in the periplasm. Translocation of the N-terminal domain requires YidC; translocation of the large C-terminal domain requires both YidC and the Sec translocon, and is dependent upon prior translocation of the N-terminal domain.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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