gpmM:Gene: Difference between revisions

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!align=left {{table_heading_style}} |Standard name
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''gpmM''  
''gpmM''  
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!align=left {{table_heading_style}} |Mnemonic
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!align=left {{table_heading_style}} |Synonyms
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''gpmI, ECK3602, b3612, JW3587, yibO, pmgI, gpmC, pgmI''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''gpmI, ECK3602, b3612, JW3587, yibO, pmgI, gpmC, pgmI''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>


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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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W3110
[[REL606]]
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W3110: 3855155..3853611<br />{{GBrowseFigureByCoord|3853611|3855155|ecoli_W3110|W3110}}
NC_012967: 3726026..3727570<br />{{GBrowseFigureByCoord|3726026|3727570|REL606|NC_012967}}
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{{GBrowseLink|ecoli_W3110|AC_000091|3852611|3856155|GBrowse(W3110)}}  
{{GBrowseLink|REL606|NC_012967|3726026|3727570|GBrowse (REL606)}}
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[[REL606]]
W3110
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NC_012967: 3726026..3727570<br />{{GBrowseFigureByCoord|3726026|3727570|REL606|NC_012967}}
W3110: 3855155..3853611<br />{{GBrowseFigureByCoord|3853611|3855155|ecoli_W3110|W3110}}
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{{GBrowseLink|REL606|NC_012967|3726026|3727570|GBrowse (REL606)}}
{{GBrowseLink|ecoli_W3110|AC_000091|3852611|3856155|GBrowse(W3110)}}  
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Revision as of 01:27, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

gpmM

Mnemonic
Synonyms

gpmI, ECK3602, b3612, JW3587, yibO, pmgI, gpmC, pgmI[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

81.54 minutes 

MG1655: 3783283..3784827
gbrowse_img.php?coord=3783283..3784827&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 3726026..3727570
gbrowse_img.php?coord=3726026..3727570&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 3855155..3853611
gbrowse_img.php?coord=3853611..3855155&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

yibO

PMID:12519969[3]

ASAP

At position 1343 in Plus orientation, contains plasmid pKD46.
ASAP strain name: FB21341

yibO

PMID:12519969[3]

ASAP

At position 1343 in Plus orientation, does not contain plasmid pKD46.
ASAP strain name: FB21342

ΔgpmM724::kan

PMID:16738554[4]

CGSC:106202


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[5]

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12296

EchoBASE (EcoliWiki Page)

EchoBASE:EB2204

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3612

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4438

EcoGene (EcoliWiki Page)

EcoGene:EG12296

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YIBO

ASAP (EcoliWikiPage)

ASAP:ABE-0011818


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
  4. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

Categories

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