mlaB:Gene: Difference between revisions

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!align=left {{table_heading_style}} |Standard name
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''yrbB''  
''yrbB''  
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!align=left {{table_heading_style}} |Mnemonic
!align=left |Mnemonic
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!align=left {{table_heading_style}} |Synonyms
!align=left |Synonyms
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''ECK3180, b3191, JW5535''<ref name='LIB:Riley_2006'/>
''ECK3180, b3191, JW5535''<ref name='LIB:Riley_2006'/>


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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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*[http://biocyc.org/ECOLI/sequence?object=G7658 EcoCyc Sequence Dump]  
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[[REL606]]
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NC_012967: 3272198..3272491<br />{{GBrowseFigureByCoord|3272198|3272491|REL606|NC_012967}}
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{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3432144|3433609|FASTA Dump}}  
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NC_012967: 3272198..3272491<br />{{GBrowseFigureByCoord|3272198|3272491|REL606|NC_012967}}
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!|Feature type!!Location!!Description
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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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Synonyms:zha-6::Tn10  
Synonyms:zha-6::Tn10  


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Revision as of 03:02, 10 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

yrbB

Mnemonic
Synonyms

ECK3180, b3191, JW5535[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

71.88 minutes 

MG1655: 3335278..3334985
gbrowse_img.php?coord=3334985..3335278&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 3272198..3272491
gbrowse_img.php?coord=3272198..3272491&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 3337111..3336818
gbrowse_img.php?coord=3336818..3337111&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 3433023..3432730
gbrowse_img.php?coord=3432730..3433023&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5535

Plasmid clone

Shigen

PMID:16769691[2]

Status:Clone OK

Primer 1:GCCAGCGAGTCACTGAGCTGGATgca

Primer 2:CCACGAGGCAGAACATCAGCAGG

sfsB203::Tn10

Linked marker

CAG12072 = CGSC7440[3]

est. P1 cotransduction: 89% [4]
Synonyms:zgj-203::Tn10, zha-203::Tn10

zhc-6::Tn10

Linked marker

CAG12153 = CGSC7442[3]

est. P1 cotransduction: 33% [4]
Synonyms:zha-6::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7658

EchoBASE (EcoliWiki Page)

EchoBASE:EB2649

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3191

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C3950

EcoGene (EcoliWiki Page)

EcoGene:EG12797

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YRBB

ASAP (EcoliWikiPage)

ASAP:ABE-0010487


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  3. ↑ 3.0 3.1 CGSC: The Coli Genetics Stock Center
  4. ↑ 4.0 4.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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