appA:Gene Product(s): Difference between revisions
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{| | {| id="O46aa4fb2918d8" class=" tableEdit Product_nomenclature_table" | ||
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!align=left | !align=left |Standard name | ||
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AppA | AppA | ||
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!align=left | !align=left |Synonyms | ||
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phosphoanhydride phosphorylase<ref name='LIB:Riley_2006'/>, B0980<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AppA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | phosphoanhydride phosphorylase<ref name='LIB:Riley_2006'/>, B0980<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AppA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left |Product description | ||
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AppA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | AppA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Acid phosphatase, pH 2.5, exopolyphosphatase; phytase<ref name='LIB:EcoGene'/> | Acid phosphatase, pH 2.5, exopolyphosphatase; phytase<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left |EC number (for enzymes) | ||
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* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.26 3.1.3.26]<ref name='LIB:Riley_2006'/> | * [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.26 3.1.3.26]<ref name='LIB:Riley_2006'/> | ||
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2]<ref name='LIB:Riley_2006'/> | * [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2]<ref name='LIB:Riley_2006'/> | ||
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{| | {| id="O46aa4fb38a97d" class=" tableEdit GO_table_product dataTable" | ||
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status | !|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status | ||
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!|Partner Type!!Partner!!Notes!!References!!Evidence | !|Partner Type!!Partner!!Notes!!References!!Evidence | ||
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Experiment(s):EBI-1138534<br /> | Experiment(s):EBI-1138534<br /> | ||
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!|Compartment!!Description!!Evidence!!Source!!Notes | !|Compartment!!Description!!Evidence!!Source!!Notes | ||
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PMID:8387749 | PMID:8387749 | ||
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[http://www.york.ac.uk/res/thomas/Echolocation.cfm?EB_SubLocID=EB0047 EchoLocation:appA] | [http://www.york.ac.uk/res/thomas/Echolocation.cfm?EB_SubLocID=EB0047 EchoLocation:appA] | ||
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{| | {| id="O46aa4fc1e2c49" class=" tableEdit Product_phys_prop_table" | ||
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!align=left | !align=left |Sequence | ||
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[http://biocyc.org/ECOLI/sequence-aa?object=APPA-MONOMER at EcoCyc] | [http://biocyc.org/ECOLI/sequence-aa?object=APPA-MONOMER at EcoCyc] | ||
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IVNEARIPAC SL</pre> | IVNEARIPAC SL</pre> | ||
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!align=left | !align=left |Length | ||
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432 | 432 | ||
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!align=left | !align=left |Mol. Wt | ||
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47.057 kDa | 47.057 kDa | ||
|- | |- | ||
!align=left | !align=left |pI | ||
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6.7 (calculated) | 6.7 (calculated) | ||
|- | |- | ||
!align=left | !align=left |Extinction coefficient | ||
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49,960 - 50,960 (calc based on 4 Y, 8 W, and 8 C residues) | 49,960 - 50,960 (calc based on 4 Y, 8 W, and 8 C residues) | ||
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!|Type!!Residues!!Description!!Notes | !|Type!!Residues!!Description!!Notes | ||
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[http://www.uniprot.org/uniprot/P07102#section_features UniProt:P07102] | [http://www.uniprot.org/uniprot/P07102#section_features UniProt:P07102] | ||
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!align=left | !align=left |Structures | ||
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<beststructure> | <beststructure> | ||
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</beststructure> | </beststructure> | ||
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!align=left | !align=left |Models | ||
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View models at: | View models at: | ||
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* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP) | * [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP) | ||
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Revision as of 00:01, 9 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
AppA |
|---|---|
| Synonyms | |
| Product description |
Acid phosphatase, pH 2.5, exopolyphosphatase; phytase[4] |
| EC number (for enzymes) | |
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0042597 |
periplasmic space |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [5] |
complete | |||
| GO:0003824 |
catalytic activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0003993 |
acid phosphatase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0008707 |
4-phytase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0016787 |
hydrolase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0030288 |
outer membrane-bounded periplasmic space |
C |
Seeded from Riley et al 2006 [1]. |
required fields missing | ||||
| GO:0006793 |
phosphorus metabolic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0042594 |
response to starvation |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
eaeH |
Experiment(s):EBI-1138534 | ||
|
Protein |
rplB |
Experiment(s):EBI-1138534 | ||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Source | Notes |
|---|---|---|---|---|
|
periplasm |
From EcoCyc[3] |
|||
|
Periplasm |
| |||
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MKAILIPFLS LLIPLTPQSA FAQSEPELKL ESVVIVSRHG VRAPTKATQL MQDVTPDAWP TWPVKLGWLT PRGGELIAYL GHYQRQRLVA DGLLAKKGCP QSGQVAIIAD VDERTRKTGE AFAAGLAPDC AITVHTQADT SSPDPLFNPL KTGVCQLDNA NVTDAILSRA GGSIADFTGH RQTAFRELER VLNFPQSNLC LKREKQDESC SLTQALPSEL KVSADNVSLT GAVSLASMLT EIFLLQQAQG MPEPGWGRIT DSHQWNTLLS LHNAQFYLLQ RTPEVARSRA TPLLDLIKTA LTPHPPQKQA YGVTLPTSVL FIAGHDTNLA NLGGALELNW TLPGQPDNTP PGGELVFERW RRLSDNSQWI QVSLVFQTLQ QMRDKTPLSL NTPPGEVKLT LAGCEERNAQ GMCSLAGFTQ IVNEARIPAC SL |
|---|---|
| Length |
432 |
| Mol. Wt |
47.057 kDa |
| pI |
6.7 (calculated) |
| Extinction coefficient |
49,960 - 50,960 (calc based on 4 Y, 8 W, and 8 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
|
Structure figures
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 6.0 6.1 6.2 6.3 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ 7.0 7.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ Greiner, R et al. (1993) Purification and characterization of two phytases from Escherichia coli. Arch. Biochem. Biophys. 303 107-13 PubMed
Categories
- GO:0042597 ! periplasmic space
- GO:0003824 ! catalytic activity
- GO:0003993 ! acid phosphatase activity
- GO:0008707 ! 4-phytase activity
- GO:0016787 ! hydrolase activity
- GO:0030288 ! outer membrane-bounded periplasmic space
- GO:0006793 ! phosphorus metabolic process
- GO:0042594 ! response to starvation
- Proteins
- Location:periplasm
- Products with structures in PDB