insH-11:Expression: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Fixing GBrowse image on Expression pages.
Update TableEdit tables.
Line 36: Line 36:
*  
*  
****************************************************************************************** -->{{Help Cellular levels}}
****************************************************************************************** -->{{Help Cellular levels}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="H49c02e07f1974" class=" tableEdit MoleculesPerCellTable"   
|- align='left' bgcolor='#CCCCFF'
|-
!|Molecule!!Organism or Strain!!Cellular level!!Units!!Medium!!Temperature °C!!Other (e.g. anaerobic)!!Growth rate!!Assay used!!Notes!!Reference(s)
!|Molecule!!Organism or Strain!!Cellular level!!Units!!Medium!!Temperature °C!!Other (e.g. anaerobic)!!Growth rate!!Assay used!!Notes!!Reference(s)


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.33156.H49c02e07f1974&page=33156&pagename={{FULLPAGENAMEE}}&type=0&template=MoleculesPerCellTable edit table] || || || || || || || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.33156.H49c02e07f1974&page=33156&pagename={{FULLPAGENAMEE}}&type=0&template=MoleculesPerCellTable edit table]</span> || || || || || || || || || ||
|}
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.33156.H49c02e07f1974-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.33156.H49c02e07f1974-->
Line 59: Line 59:
*  
*  
****************************************************************************************** -->{{expression_transcription_help}}
****************************************************************************************** -->{{expression_transcription_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="X46ab3a745089f" class=" tableEdit Expression_operons_table"   
|- {{table heading style}}
|-
!|Transcription unit(s)
!|Transcription unit(s)
|-  
|-  
Line 66: Line 66:
[[:Category:Txn_unit:insH-1|insH-1]]  
[[:Category:Txn_unit:insH-1|insH-1]]  


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.33156.X46ab3a745089f&page=33156&pagename={{FULLPAGENAMEE}}&type=&template=Expression_operons_table edit table]
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.33156.X46ab3a745089f&page=33156&pagename={{FULLPAGENAMEE}}&type=&template=Expression_operons_table edit table]</span>
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.33156.X46ab3a745089f-->||{{RegulonDBfig|ECK120004305.jpg|INSH-11}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.33156.X46ab3a745089f-->||{{RegulonDBfig|ECK120004305.jpg|INSH-11}}
Line 100: Line 100:
*  
*  
****************************************************************************************** -->{{Expression_allele_table_help}}
****************************************************************************************** -->{{Expression_allele_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="E46ab3a7526f14" class=" tableEdit Expression_allele_table"   
|- {{table_heading_style}}
|-
!|Allele Name!!Mutation!!Phenotype!!Reference
!|Allele Name!!Mutation!!Phenotype!!Reference


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.33156.E46ab3a7526f14&page=33156&pagename={{FULLPAGENAMEE}}&type=&template=Expression_allele_table edit table] || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.33156.E46ab3a7526f14&page=33156&pagename={{FULLPAGENAMEE}}&type=&template=Expression_allele_table edit table]</span> || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.33156.E46ab3a7526f14-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.33156.E46ab3a7526f14-->
Line 118: Line 118:
*  
*  
****************************************************************************************** -->{{Expression_studies_table_help}}
****************************************************************************************** -->{{Expression_studies_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="U46ab3a7592376" class=" tableEdit Expression_studies_table"   
|- {{table heading style}}
|-
!|Type!!Reference!!Notes
!|Type!!Reference!!Notes
|-  
|-  
Line 136: Line 136:
Summary of data for insH-11 from multiple microarray studies   
Summary of data for insH-11 from multiple microarray studies   


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.33156.U46ab3a7592376&page=33156&pagename={{FULLPAGENAMEE}}&type=&template=Expression_studies_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.33156.U46ab3a7592376&page=33156&pagename={{FULLPAGENAMEE}}&type=&template=Expression_studies_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.33156.U46ab3a7592376-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.33156.U46ab3a7592376-->
Line 150: Line 150:
*  
*  
****************************************************************************************** -->{{Expression_resource_table_help}}
****************************************************************************************** -->{{Expression_resource_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="B46ab3a760bbb3" class=" tableEdit Expression_resource_table"   
|- {{table heading style}}
|-
!|Resource Name!!Resource Type!!Description!!Source!!Notes
!|Resource Name!!Resource Type!!Description!!Source!!Notes
|-  
|-  
Line 220: Line 220:
GFP fusion described in Zaslaver, <i>et al.</i><br />Plate:109-AZ19; Well:B8<ref name="PMID: 16862137" />  
GFP fusion described in Zaslaver, <i>et al.</i><br />Plate:109-AZ19; Well:B8<ref name="PMID: 16862137" />  


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.33156.B46ab3a760bbb3&page=33156&pagename={{FULLPAGENAMEE}}&type=&template=Expression_resource_table edit table] || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.33156.B46ab3a760bbb3&page=33156&pagename={{FULLPAGENAMEE}}&type=&template=Expression_resource_table edit table]</span> || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.33156.B46ab3a760bbb3-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.33156.B46ab3a760bbb3-->
Line 238: Line 238:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="B46ab3a767acce" class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|-
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
Line 263: Line 263:
   
   


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.33156.B46ab3a767acce&page=33156&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.33156.B46ab3a767acce&page=33156&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.33156.B46ab3a767acce-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.33156.B46ab3a767acce-->
Line 281: Line 281:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="P46a7a76b94c4d" class=" tableEdit Links_table"   
|- {{table_heading_style}}
|-
!|Name!!URL!!Comments
!|Name!!URL!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.33156.P46a7a76b94c4d&page=33156&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.33156.P46a7a76b94c4d&page=33156&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.33156.P46a7a76b94c4d-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.33156.P46a7a76b94c4d-->

Revision as of 01:48, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Cellular level Units Medium Temperature °C Other (e.g. anaerobic) Growth rate Assay used Notes Reference(s)
edit table

Notes

Transcription and Transcriptional Regulation

[back to top]


See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

insH-1

edit table
Figure courtesy of RegulonDB


Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


gbrowse_img.php?coord=274321..274361&genome=ecoli&name=MG1655&trackset=Gene+DNA_+Protein+flip&width=400&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3505 (EcoliWiki Page)

NCBI GEO profiles for insH-11

microarray

GenExpDB:b3505 (EcoliWiki Page)

Summary of data for insH-11 from multiple microarray studies

edit table


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (274256..688569) fused to gfpmut2.

OpenBioSystems

Raw protomer fusion data from Zaslaver, et al.
Plate:109-AZ14; Well:G3[1]

GFP Fusion

Intergenic region (274256..274573) fused to gfpmut2.

OpenBioSystems

Raw protomer fusion data from Zaslaver, et al.
Plate:109-AZ17; Well:D8[1]

GFP Fusion

Intergenic region (1393853..1394168) fused to gfpmut2.

OpenBioSystems

Raw protomer fusion data from Zaslaver, et al.
Plate:109-AZ05; Well:B11[1]

GFP Fusion

Intergenic region (274256..2288567) fused to gfpmut2.

OpenBioSystems

Raw protomer fusion data from Zaslaver, et al.
Plate:109-AZ04; Well:B4[1]

GFP Fusion

Intergenic region (274256..3364578) fused to gfpmut2.

OpenBioSystems

Raw protomer fusion data from Zaslaver, et al.
Plate:109-AZ18; Well:A2[1]

GFP Fusion

Intergenic region (274256..3651631) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ19; Well:B8[1]

edit table

<protect>

Notes

Accessions Related to insH-11 Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7769

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3505

EchoBASE (EcoliWiki Page)

EchoBASE:EB4730


edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=insH-11:Expression&oldid=980836"