hfq:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
imported>Wikientrybot
No edit summary
Update TableEdit tables.
Line 24: Line 24:
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->{{Quickview_table_help}}
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{| id="G49aee8b7dd8ab" class=" tableEdit New_Quickview_Table"


|-
|-
!align=left {{table_heading_style}} |Standard Name
!align=left |Standard Name
||
||
''hfq''  
''hfq''  
|-
|-
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left |Gene Synonym(s)
||
||
''ECK4168, b4172, JW4130, HF-I, HF-1''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK4168, b4172, JW4130, HF-I, HF-1''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left |Product Desc.
||
||
RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
Line 43: Line 43:
Global regulator of sRNA function; host factor for RNA phage Q beta replication; HF-I; DNA- and RNA-binding protein; RNA chaperone; multiple regulatory roles: destabilzes ompA mRNA, improves rpoS translation, sRNA DsrA co-factor; binds RNAP; ATPase<ref name='LIB:EcoGene'/>
Global regulator of sRNA function; host factor for RNA phage Q beta replication; HF-I; DNA- and RNA-binding protein; RNA chaperone; multiple regulatory roles: destabilzes ompA mRNA, improves rpoS translation, sRNA DsrA co-factor; binds RNAP; ATPase<ref name='LIB:EcoGene'/>
|-
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left |Product Synonyms(s)
||
||
HF-I, host factor for RNA phage Q beta replication product<ref name='LIB:Riley_2006'/>, B4172 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hfq product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HF-I product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, host factor I product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
HF-I, host factor for RNA phage Q beta replication product<ref name='LIB:Riley_2006'/>, B4172 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hfq product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HF-I product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, host factor I product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left |Knock-Out Phenotype
||
||


|-
|-
!align=left {{table_heading_style}} |Regulation/Expression
!align=left |Regulation/Expression
||
||
transcription unit(s): [[:Category:Txn_unit:yjeFE-amiB-mutL-miaA-hfq-hflXKC|yjeFE-amiB-mutL-miaA-hfq-hflXKC]]<ref name='LIB:EcoCyc10.6'/>, ORF55-ORF17-amiB-mutL-miaA-hfq-hflXKC  
transcription unit(s): [[:Category:Txn_unit:yjeFE-amiB-mutL-miaA-hfq-hflXKC|yjeFE-amiB-mutL-miaA-hfq-hflXKC]]<ref name='LIB:EcoCyc10.6'/>, ORF55-ORF17-amiB-mutL-miaA-hfq-hflXKC  
|-
|-
!align=left {{table_heading_style}} |Regulation/Activity
!align=left |Regulation/Activity
||
||




|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.10096.G49aee8b7dd8ab&page=10096&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.10096.G49aee8b7dd8ab&page=10096&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.10096.G49aee8b7dd8ab--></protect>
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.10096.G49aee8b7dd8ab--></protect>

Revision as of 01:34, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

hfq

Gene Synonym(s)

ECK4168, b4172, JW4130, HF-I, HF-1[1][2]

Product Desc.

RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins[2][3];

Component of HF-I, host factor for RNA phage Q β replication[3]

Global regulator of sRNA function; host factor for RNA phage Q beta replication; HF-I; DNA- and RNA-binding protein; RNA chaperone; multiple regulatory roles: destabilzes ompA mRNA, improves rpoS translation, sRNA DsrA co-factor; binds RNAP; ATPase[4]

Product Synonyms(s)

HF-I, host factor for RNA phage Q beta replication product[1], B4172 product[2][1], Hfq product[2][1], HF-I product[2][1], host factor I product[2][1]

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yjeFE-amiB-mutL-miaA-hfq-hflXKC[2], ORF55-ORF17-amiB-mutL-miaA-hfq-hflXKC

Regulation/Activity


edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


The C-terminal of Hfq is not necessary for hexamerization. RNA binding is located primarily at the N-terminal. Hfq has intrinsic ATPase activity (Sukhodolets, 2003; Arluison, 2007).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=hfq:Quickview&oldid=979944"