ydiU:Expression: Difference between revisions

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!Transcription unit(s)
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[[:Category:Txn_unit:ydiU|ydiU]]  
[[:Category:Txn_unit:ydiU|ydiU]]  
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===Notes===
===Notes===
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<big>'''Expression Studies'''</big>
<big>'''Expression Studies'''</big>
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microarray
microarray
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|[[PMID:16677314]]<ref name=PMID:16677314/>
[[PMID:16677314]]<ref name=PMID:16677314/>
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ydiU is activated by IscR  
ydiU is activated by IscR  
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reporter genes
reporter genes
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|[[PMID:16677314]]<ref name=PMID:16677314/>
[[PMID:16677314]]<ref name=PMID:16677314/>
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a chromosomal lacZ fusion to the ydiU promoter region was constructed by replacing the chromosomal lac promoter  
a chromosomal lacZ fusion to the ydiU promoter region was constructed by replacing the chromosomal lac promoter  
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<big>'''Expression Resources'''</big>
<big>'''Expression Resources'''</big>
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<protect><!--Expression_experimental_notes--></protect>
<protect><!--Expression_experimental_notes--></protect>
===Notes===
===Notes===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6924 EcoCyc:G6924]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6924 EcoCyc:G6924]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB3737 EchoBASE:EB3737]
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB3737 EchoBASE:EB3737]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
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[http://genexpdb.ou.edu/index.php?query=b1706 GenExpDB:b1706]
[http://chase.ou.edu/macro/searchlink.php?bnum=b1706 EcoliGenExpDB:b1706]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
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[http://ecogene.org/geneinfo.php?eg_id=EG13980 EcoGene:EG13980]
[http://ecogene.org/geneinfo.php?eg_id=EG13980 EcoGene:EG13980]
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<protect><!--Accessions_notes--></protect>
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===Notes===
===Notes===
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__NOTOC__
__NOTOC__

Revision as of 06:02, 6 February 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

ydiU

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Figure courtesy of RegulonDB


Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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gbrowse_img.php?coord=1789248..1789288&genome=ecoli&name=MG1655&trackset=Genes_unlabeled+DNA_unlabeled+flip&width=400&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GenExpDB:b1706 (EcoliWiki Page)

Summary of data for ydiU from multiple microarray studies

microarray

PMID:16677314[1]

ydiU is activated by IscR

reporter genes

PMID:16677314[1]

a chromosomal lacZ fusion to the ydiU promoter region was constructed by replacing the chromosomal lac promoter

microarray

GEO Profiles:b1706 (EcoliWiki Page)

NCBI GEO profiles for ydiU

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (1789198..1789386) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ17; Well:A11[2]

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<protect>

Notes

Accessions Related to ydiU Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6924

EchoBASE (EcoliWiki Page)

EchoBASE:EB3737

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1706

EcoGene (EcoliWiki Page)

EcoGene:EG13980


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Notes

Links

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Name URL Comments
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References

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  1. ↑ 1.0 1.1 Giel, JL et al. (2006) IscR-dependent gene expression links iron-sulphur cluster assembly to the control of O2-regulated genes in Escherichia coli. Mol. Microbiol. 60 1058-75 PubMed
  2. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed


Categories

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