plsC:Gene Product(s): Difference between revisions

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!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
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PlsC product  
PlsC product  
|-
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!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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1-acyl-sn-glycerol-3-phosphate acyltransferase product<ref name='LIB:Riley_2006'/>, B3018 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ParF product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PlsC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
1-acyl-sn-glycerol-3-phosphate acyltransferase product<ref name='LIB:Riley_2006'/>, B3018 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ParF product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PlsC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


|-
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!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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** [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.51 2.3.1.51]<ref name='LIB:Riley_2006'/>
** [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.51 2.3.1.51]<ref name='LIB:Riley_2006'/>
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|
|
[[Category:GO:0003841_!_1-acylglycerol-3-phosphate_O-acyltransferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003841_!_1-acylglycerol-3-phosphate_O-acyltransferase_activity GO:0003841]
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1-acylglycerol-3-phosphate O-acyltransferase activity
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
|
InterPro:IPR004552
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
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|
[[Category:GO:0003841_!_1-acylglycerol-3-phosphate_O-acyltransferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003841_!_1-acylglycerol-3-phosphate_O-acyltransferase_activity GO:0003841]
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1-acylglycerol-3-phosphate O-acyltransferase activity
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GO_REF:0000003
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IEA: Inferred from Electronic Annotation
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EC:2.3.1.51
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F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
|
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[[Category:GO:0008152_!_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008152_!_metabolic_process GO:0008152]
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metabolic process
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR002123
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
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|
[[Category:GO:0008415_!_acyltransferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008415_!_acyltransferase_activity GO:0008415]
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acyltransferase activity
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR002123
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
|
|
[[Category:GO:0008415_!_acyltransferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008415_!_acyltransferase_activity GO:0008415]
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acyltransferase activity
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GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0012
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F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
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|
[[Category:GO:0008654_!_phospholipid_biosynthetic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008654_!_phospholipid_biosynthetic_process GO:0008654]
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phospholipid biosynthetic process
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR004552
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
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|
[[Category:GO:0008654_!_phospholipid_biosynthetic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008654_!_phospholipid_biosynthetic_process GO:0008654]
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phospholipid biosynthetic process
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0594
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P
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
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[[Category:GO:0016020_!_membrane]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016020_!_membrane GO:0016020]
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membrane
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR004552
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-
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|
[[Category:GO:0016020_!_membrane]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016020_!_membrane GO:0016020]
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membrane
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0397
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C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
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[[Category:GO:0016020_!_membrane]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016020_!_membrane GO:0016020]
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membrane
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0472
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C
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
|-  
|-  
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required fields missing   
required fields missing   
|-
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[[Category:GO:0016740_!_transferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016740_!_transferase_activity GO:0016740]
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transferase activity
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0808
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete


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!Compartment!!Description!!Evidence!!Notes
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plasma membrane
plasma membrane
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From EcoCyc<ref name='LIB:EcoCyc11.1'/>   
From EcoCyc<ref name='LIB:EcoCyc11.1'/>   
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER at EcoCyc]  
<pre>MLYIFRLIIT VIYSILVCVF GSIYCLFSPR NPKHVATFGH MFGRLAPLFG LKVECRKPTD
<pre>MLYIFRLIIT VIYSILVCVF GSIYCLFSPR NPKHVATFGH MFGRLAPLFG LKVECRKPTD
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AAGKV</pre>  
AAGKV</pre>  
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!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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27.45 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
27.45 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
|-
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!{{table heading style}} |pI
!align=left {{table heading style}} |pI
|
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9.76<ref name='LIB:EcoCyc10.6'/>  
9.76<ref name='LIB:EcoCyc10.6'/>  
|-
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
|
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28420 - 29045 (calc based on 8 Y, 3 W, and 5 C residues)  
28420 - 29045 (calc based on 8 Y, 3 W, and 5 C residues)  
|-
 
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER EcoCyc:1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER EcoCyc:1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER]
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|-
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
|
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[[uniprot:P26647|UniProt:P26647]]
[[uniprot:P26647|UniProt:P26647]]
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|-
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
|
|
[http://pfam.sanger.ac.uk/family?acc=PF01553 PFAM:PF01553]
[http://pfam.sanger.ac.uk/family?acc=PF01553 PFAM:PF01553]
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|-
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
|
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417490 RefSeq:NP_417490]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417490 RefSeq:NP_417490]
|
|
   
   
|-
|-  
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[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])  
[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])  
|
|
[http://salilab.org/modbase/searchbyid?databaseID=P26647 ModBase:P26647]
[http://salilab.org/modbase/searchbyid?databaseID=P26647 ModBase:P26647]
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Revision as of 02:31, 15 November 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

PlsC product

Synonyms

1-acyl-sn-glycerol-3-phosphate acyltransferase product[1], B3018 product[2][1], ParF product[2][1], PlsC product[2][1]

Product description

1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER[2][3]

EC number (for enzymes)
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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0031225

anchored to membrane

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0006654

phosphatidic acid biosynthetic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions

Partner Type Partner Notes
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes

plasma membrane

From EcoCyc[3]

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See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MLYIFRLIIT VIYSILVCVF GSIYCLFSPR NPKHVATFGH MFGRLAPLFG LKVECRKPTD
AESYGNAIYI ANHQNNYDMV TASNIVQPPT VTVGKKSLLW IPFFGQLYWL TGNLLIDRNN
RTKAHGTIAE VVNHFKKRRI SIWMFPEGTR SRGRGLLPFK TGAFHAAIAA GVPIIPVCVS
TTSNKINLNR LHNGLVIVEM LPPIDVSQYG KDQVRELAAH CRSIMEQKIA ELDKEVAERE
AAGKV
Mol. Wt

27.45 kDa (calc) [2]

pI

9.76[2]

Extinction coefficient

28420 - 29045 (calc based on 8 Y, 3 W, and 5 C residues)

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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes

Modification Site

1

N-formylmethionine (Probable)

UniProt:P26647

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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structures

<beststructure>plsC 562</beststructure>

Models

View models at:

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See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER

UniProt (EcoliWiki Page)

UniProt:P26647

PFAM (EcoliWiki Page)

PFAM:PF01553

RefSeq (EcoliWiki Page)

RefSeq:NP_417490

ModBase (EcoliWiki Page)

ModBase:P26647


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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


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