eutD:Gene: Difference between revisions

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!Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7288 EcoCyc:G7288]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7288 EcoCyc:G7288]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB3940 EchoBASE:EB3940]
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB3940 EchoBASE:EB3940]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
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[http://chase.ou.edu/macro/searchlink.php?bnum=b2458 EcoliGenExpDB:b2458]
[http://chase.ou.edu/macro/searchlink.php?bnum=b2458 EcoliGenExpDB:b2458]
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
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[http://BioCyc.org/ECOL199310/new-image?object=C2983 ECOL199310CYC:C2983]
[http://BioCyc.org/ECOL199310/new-image?object=C2983 ECOL199310CYC:C2983]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
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[http://ecogene.org/geneinfo.php?eg_id=EG14188 EcoGene:EG14188]
[http://ecogene.org/geneinfo.php?eg_id=EG14188 EcoGene:EG14188]
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])  
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])  
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[http://BioCyc.org/ECOO157/new-image?object=EUTI ECOO157CYC:EUTI]
[http://BioCyc.org/ECOO157/new-image?object=EUTI ECOO157CYC:EUTI]
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0008097&formSubmitReturn=1 ASAP:ABE-0008097] 
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Revision as of 23:59, 15 September 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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Standard name

eutD

Mnemonic
Synonyms

eutI, ECK2453, b2458, JW2442, ypfA[1][2]

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

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Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

55.4 minutes 

MG1655: 2571527..2570511
gbrowse_img.php?coord=2569511..2572527&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 2572161..2571145
gbrowse_img.php?coord=2570145..2573161&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

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Feature type Location Description
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

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Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔeutD778::kan

PMID:16738554[3]

CGSC:106170


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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Resources

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Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7288

EchoBASE (EcoliWiki Page)

EchoBASE:EB3940

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2458

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C2983

EcoGene (EcoliWiki Page)

EcoGene:EG14188

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:EUTI

ASAP (EcoliWikiPage)

ASAP:ABE-0008097


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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed


Categories

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