dinB:Expression: Difference between revisions

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!Resource Name!!Resource Type!!Description!!Source!!Notes
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GFP Fusion
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Intergenic region (250744..250966) fused to <i>gfpmut2</i>.
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[http://www.openbiosystems.com/GeneExpression/Non-Mammalian/Bacteria/EcoliPromoters/ OpenBioSystems][[Category:Genes in OpenBioSystems with Promoter Fusions]]
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Raw protomer fusion data from Zaslaver, <i>et al.</i><br />Plate:109-AZ12; Well:G7<ref name="PMID:16862137" />
 
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Revision as of 21:03, 9 September 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Transcription and Transcriptional Regulation

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Transcription unit(s)

dinB yafNOP

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Figure courtesy of RegulonDB

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Notes

Transcription is repressed by LexA [1] Transcription in stationary phase is RpoS-dependent [2]

Translation and Regulation of Translation

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gbrowse_img.php?coord=250878..250918&genome=ecoli&name=MG1655&trackset=Genes_unlabeled+DNA_unlabeled&width=400&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

DinB protein levels are GroEL-dependent [3]

Experimental

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Mutations Affecting Expression

Allele Name Mutation Phenotype Reference
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See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Expression Studies

Type Reference Notes

microarray

EcoliGenExpDB:b0231 (EcoliWiki Page)

Summary of data for dinB from multiple microarray studies

microarray

PMID:11333217[4]

UV induction

microarray

GEO Profiles:b0231 (EcoliWiki Page)

NCBI GEO profiles for dinB

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See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Expression Resources

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (250744..250966) fused to gfpmut2.

OpenBioSystems

Raw protomer fusion data from Zaslaver, et al.
Plate:109-AZ12; Well:G7[5]

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See Help:Expression_resources for help entering or editing information in this section of EcoliWiki. <protect>

Notes

Accessions Related to dinB Expression

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6115

EchoBASE (EcoliWiki Page)

EchoBASE:EB2935

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0231

EcoGene (EcoliWiki Page)

EcoGene:EG13141

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See Help:Expression_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Kenyon, CJ & Walker, GC (2005) DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli. 1980. DNA Repair (Amst.) 4 1049-53 PubMed
  2. ↑ Layton, JC & Foster, PL (2003) Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli. Mol. Microbiol. 50 549-61 PubMed
  3. ↑ Layton, JC & Foster, PL (2005) Error-prone DNA polymerase IV is regulated by the heat shock chaperone GroE in Escherichia coli. J. Bacteriol. 187 449-57 PubMed
  4. ↑ Courcelle, J et al. (2001) Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli. Genetics 158 41-64 PubMed
  5. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed


Categories

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