rpoB:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418414&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418414&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:57, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000006850 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000011389 (score: 0.239)
  • ENSANGP00000020031 (score: 0.057)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000035580 (score: 1.000; bootstrap: 99%)
  • ENSAPMP00000023665 (score: 0.204)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G45140 (score: 1.000; bootstrap: 100%)
  • AT4G21710 (score: 0.211)
  • AT3G23780 (score: 0.096)
  • AT3G18090 (score: 0.089)
  • AT1G29940 (score: 0.060)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000025800 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000037862 (score: 0.257)
  • ENSBTAP00000018830 (score: 0.071)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00042252 (score: 1.000; bootstrap: 100%)
  • WBGene00037662 (score: 0.264)
  • WBGene00038678 (score: 0.104)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000003370 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000002728 (score: 0.220)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041008-1 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-164 (score: 0.624)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0216277 (score: 1.000; bootstrap: 100%)
  • DDB0216313 (score: 0.228)
  • DDB0216278 (score: 0.073)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0003276 (score: 1.000; bootstrap: 100%)
  • FBgn0004463 (score: 0.226)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA16485-PA (score: 1.000; bootstrap: 100%)
  • GA21006-PA (score: 0.228)
  • GA17896-PA (score: 0.050)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000018549 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000020620 (score: 0.231)
  • ENSGALP00000014001 (score: 0.055)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000312735 (score: 1.000; bootstrap: 100%)
  • ENSP00000228347 (score: 0.235)
  • ENSP00000263331 (score: 0.052)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000018408 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000006893 (score: 0.207)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000025899 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000002305 (score: 0.235)

From Inparanoid:20070104

Mus musculus

  • MGI:2388280 (score: 1.000; bootstrap: 100%)
  • MGI:1917678 (score: 0.233)
  • MGI:108014 (score: 0.054)

From Inparanoid:20070104

Oryza gramene

  • P12091 (score: 1.000; bootstrap: 100%)
  • Q6ENI4 (score: 1.000; bootstrap: 100%)
  • Q9XPS7 (score: 1.000; bootstrap: 100%)
  • Q6QXV7 (score: 1.000; bootstrap: 100%)
  • Q7DNA7 (score: 1.000; bootstrap: 100%)
  • Q6QY83 (score: 1.000; bootstrap: 100%)
  • Q7XM77 (score: 1.000; bootstrap: 100%)
  • Q6L3A7 (score: 0.982)
  • Q6ENX3 (score: 0.982)
  • P16023 (score: 0.982)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000027669 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000009150 (score: 0.231)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000030781 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000009746 (score: 0.233)
  • ENSRNOP00000024882 (score: 0.054)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOR207C (score: 1.000; bootstrap: 100%)
  • YOR151C (score: 0.237)
  • YPR010C (score: 0.072)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC4G98c (score: 1.000; bootstrap: 100%)
  • SPAC23G31 (score: 0.233)
  • SPBP23A107 (score: 0.080)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000151234 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000164767 (score: 0.171)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00008589001 (score: 1.000; bootstrap: 100%)
  • GSTENP00022790001 (score: 0.209)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000012617 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000011722 (score: 0.187)
  • ENSXETP00000030114 (score: 0.061)

From Inparanoid:20070104

Shigella flexneri

RPOB

From SHIGELLACYC

E. coli O157

RPOB

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF04563

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Notes

Links

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Name URL Comments
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References

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