trpB:Gene Product(s): Difference between revisions

Standard name	TrpB product
Synonyms	tryptophan synthase, beta subunit product^[1], B1261 product^[2]^[1], TrpB product^[2]^[1], β subunit product^[2]^[1]
Product description	tryptophan synthase, β subunit^[2]^[3]; Component of ; tryptophan synthase, β subunit dimer^[3]; tryptophan synthase^[2]^[3]
EC number (for enzymes)	4.2.1.20^[1]
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Aspect	Notes	Status
	GO:0005737	cytoplasm	C	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0000162	tryptophan biosynthetic process	P	Seeded from EcoCyc 11.1^[3].	required fields missing
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Interactions

Partner Type	Partner	Notes
Protein	Subunits of tryptophan synthase, β subunit dimer	could be indirect
Protein	Subunits of tryptophan synthase	could be indirect
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MTTLLNPYFG EFGGMYVPQI LMPALRQLEE AFVSAQKDPE FQAQFNDLLK NYAGRPTALT KCQNITAGTN TTLYLKREDL LHGGAHKTNQ VLGQALLAKR MGKTEIIAET GAGQHGVASA LASALLGLKC RIYMGAKDVE RQSPNVFRMR LMGAEVIPVH SGSATLKDAC NEALRDWSGS YETAHYMLGT AAGPHPYPTI VREFQRMIGE ETKAQILERE GRLPDAVIAC VGGGSNAIGM FADFINETNV GLIGVEPGGH GIETGEHGAP LKHGRVGIYF GMKAPMMQTE DGQIEESYSI SAGLDFPSVG PQHAYLNSTG RADYVSITDD EALEAFKTLC LHEGIIPALE SSHALAHALK MMRENPDKEQ LLVVNLSGRG DKDIFTVHDI LKARGEI
Mol. Wt	42.98 kDa (calc) ^[2]
pI	6.04^[2]
Extinction coefficient	23380 - 24005 (calc based on 12 Y, 1 W, and 5 C residues)
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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession	Residues covered	Notes
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:TRYPSYN-BPROTEIN
SwissModel (EcoliWiki Page)	SwissModel:P0A879
UniProt (EcoliWiki Page)	UniProt:P0A879
PFAM (EcoliWiki Page)	PFAM:PF00291
RefSeq (EcoliWiki Page)	RefSeq:NP_415777
ModBase (EcoliWiki Page)	ModBase:P0A879
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] 3.0 ^3.1 ^3.2 ^3.3 ^3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[1]

[2]

[3]

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@@ Line 16: / Line 25: @@
 |{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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 ==Nomenclature==
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 !{{table heading style}} |Synonyms
 |
-tryptophan synthase, beta subunit<ref name='LIB:Riley_2006'/>, B1261<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TrpB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, &beta; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+tryptophan synthase, beta subunit product<ref name='LIB:Riley_2006'/>, B1261 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TrpB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, &beta; subunit product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
 |-
 !{{table heading style}} |Product description
 |
-tryptophan synthase, &beta; subunit<ref name='LIB:EcoCyc10.6'/>; tryptophan synthase, &beta; subunit<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:tryptophan synthase, &beta; subunit dimer|tryptophan synthase, &beta; subunit dimer]]<ref name='LIB:EcoCyc11.1'/>; tryptophan synthase, &beta; subunit dimer<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:tryptophan synthase|tryptophan synthase]]<ref name='LIB:EcoCyc10.6'/>; tryptophan synthase<ref name='LIB:EcoCyc10.6'/>; tryptophan synthase<ref name='LIB:EcoCyc11.1'/>
+tryptophan synthase, &beta; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
+Component of ; [[:Category:Complex:tryptophan synthase, &beta; subunit dimer|tryptophan synthase, &beta; subunit dimer]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:tryptophan synthase|tryptophan synthase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
 |-
 !{{table heading style}} |EC number (for enzymes)
 |
-*[http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=4.2.1.20 4.2.1.20]<ref name='LIB:Riley_2006'/>
+** [http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=4.2.1.20 4.2.1.20]<ref name='LIB:Riley_2006'/>
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@@ Line 48: / Line 59: @@
 ==Function==
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 <protect>
-===Gene Ontology===
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 required fields missing
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 could be indirect
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 <!--Function_notes--></protect>
 ===Notes===
 ==Localization==
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22486.L46a7f2f36b7e0-->
+<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
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 ===Notes===
 ==Structure and Physical Properties==
+{{BacktoTop}}
 <protect>
-===Physical Properties===
+<span id="Sequence"></span><big>'''Physical Properties'''</big>
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 - 24005 (calc based on 12 Y, 1 W, and 5 C residues)
 |-
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-===Domains/Motifs/Modification Sites===
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@@ Line 184: / Line 219: @@
 ==Gene Product Resources==
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 ==Accessions in Other Databases==
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 ==Links==
+{{BacktoTop}}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22486.J46a7f2f937f9d-->
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+<noinclude>
-<noinclude>
 ==References==
+{{BacktoTop}}
 {{RefHelp}}
 <references/>
 __NOTOC__
-[[Category:GO:0005737]][[Category:GO:0000162]][[Category:Complex:tryptophan synthase, &beta; subunit dimer]][[Category:Complex:tryptophan synthase]]</noinclude>
+</noinclude>

trpB:Gene Product(s): Difference between revisions

Revision as of 10:30, 28 July 2007

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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